JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEFB125_chr20_82672_102094	1/1	t0001	716	443	91	80	210	14	46	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	t0002	716	22	0	0	22	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	t0003	716	3	0	0	3	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	t0004	716	1	0	0	1	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	t0005	716	1	1	0	0	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	t0006	716	1	0	0	1	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB125_chr20_82672_102094	0/0	t0007	716	1	0	0	1	0	0	copy fasta	DEFB125	chr20	82672	102094
DEFB126_chr20_137590_150751	1/1	t0001	99	460	90	74	228	18	48	copy fasta	DEFB126	chr20	137590	150751
DEFB127_chr20_152454_164163	0/1	t0001	230	186	19	37	100	8	21	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0002	231	157	3	25	104	5	20	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0003	231	65	35	8	20	0	2	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	1/0	t0004	231	33	28	4	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0005	231	2	2	0	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0006	231	2	2	0	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0007	230	2	0	0	0	1	1	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0008	231	1	0	1	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0009	231	1	0	1	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB127_chr20_152454_164163	0/0	t0010	231	1	1	0	0	0	0	copy fasta	DEFB127	chr20	152454	164163
DEFB128_chr20_182853_194711	1/1	t0001	122	470	92	80	234	14	48	copy fasta	DEFB128	chr20	182853	194711
DEFB129_chr20_222258_234886	1/1	t0001	147	361	61	64	189	15	30	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	t0002	147	76	32	7	31	1	5	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	t0003	147	8	6	2	0	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	t0004	147	4	0	1	0	2	1	copy fasta	DEFB129	chr20	222258	234886
DEFB129_chr20_222258_234886	0/0	t0005	147	1	1	0	0	0	0	copy fasta	DEFB129	chr20	222258	234886
DEFB131A_chr4_9439414_9455666	1/1	t0001	273	411	72	78	196	16	47	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	t0002	273	9	8	1	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	t0003	273	2	0	1	0	0	1	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	t0004	273	1	0	1	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB131A_chr4_9439414_9455666	0/0	t0005	273	1	0	1	0	0	0	copy fasta	DEFB131A	chr4	9439414	9455666
DEFB132_chr20_252724_266096	0/0	t0001	1846	193	22	30	113	8	20	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	1/1	t0002	1846	134	9	29	72	7	15	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0003	1846	38	25	6	5	0	2	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0004	1846	10	10	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0005	1846	8	4	0	1	2	1	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0006	1846	8	0	0	7	0	1	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0007	1846	7	6	1	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0008	1854	6	6	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0009	1846	4	4	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0010	1846	3	0	0	2	1	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0011	1845	3	0	0	3	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0012	1846	2	0	0	2	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0013	1846	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0014	1846	1	1	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0015	1846	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0016	1859	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0017	1846	1	0	1	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0018	1846	1	1	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0019	1846	1	1	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0020	1846	1	0	1	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0021	1846	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096