JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEFB132_chr20_252724_266096	0/0	t0022	1846	1	1	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0023	1846	1	0	0	0	0	1	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0024	1846	1	0	0	1	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0025	1846	1	1	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB132_chr20_252724_266096	0/0	t0026	1846	1	1	0	0	0	0	copy fasta	DEFB132	chr20	252724	266096
DEFB134_chr8_11988174_12005752	0/0	t0001	899	152	2	37	90	5	18	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0002	899	106	11	9	77	3	6	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/1	t0003	899	104	29	19	31	7	17	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0004	899	21	21	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0005	899	11	5	2	0	2	2	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0006	899	11	7	0	3	0	1	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0007	899	8	8	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0008	899	8	2	5	0	0	1	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	1/0	t0009	899	5	1	2	0	1	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0010	898	4	4	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0011	899	4	1	3	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0012	899	3	3	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0013	899	3	2	1	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0014	899	2	2	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0015	899	1	0	0	1	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0016	899	1	0	0	0	0	1	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0017	899	1	0	0	1	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0018	899	1	0	0	1	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0019	899	1	1	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB134_chr8_11988174_12005752	0/0	t0020	899	1	1	0	0	0	0	copy fasta	DEFB134	chr8	11988174	12005752
DEFB135_chr8_11977256_11989590	1/1	t0001	66	359	55	66	177	16	43	copy fasta	DEFB135	chr8	11977256	11989590
DEFB135_chr8_11977256_11989590	0/0	t0002	66	71	45	4	17	2	3	copy fasta	DEFB135	chr8	11977256	11989590
DEFB1_chr8_6865592_6882936	0/1	t0001	169	166	24	18	105	2	16	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0002	169	109	1	20	76	2	10	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	1/0	t0003	169	71	5	24	31	4	6	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0004	169	67	28	14	8	8	9	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0005	169	37	17	2	13	2	3	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0006	169	7	7	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0007	169	5	5	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0008	169	5	5	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0009	169	4	4	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0010	169	3	3	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0011	169	2	0	0	2	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0012	169	1	1	0	0	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB1_chr8_6865592_6882936	0/0	t0013	169	1	0	0	1	0	0	copy fasta	DEFB1	chr8	6865592	6882936
DEFB4A_chr8_7889677_7901716	0/0	t0001	143	88	15	27	26	4	16	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4A_chr8_7889677_7901716	0/0	t0002	143	6	5	1	0	0	0	copy fasta	DEFB4A	chr8	7889677	7901716
DEFB4B_chr8_7409855_7421863	0/0	t0001	143	122	16	40	56	4	6	copy fasta	DEFB4B	chr8	7409855	7421863
DEFB4B_chr8_7409855_7421863	0/0	t0002	143	19	2	4	10	1	2	copy fasta	DEFB4B	chr8	7409855	7421863
DEFB4B_chr8_7409855_7421863	0/0	t0003	143	1	0	0	0	1	0	copy fasta	DEFB4B	chr8	7409855	7421863
DEGS1_chr1_224178240_224198441	0/1	t0001	1061	146	23	25	75	6	16	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	1/0	t0002	1061	128	47	22	36	5	17	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0003	1061	98	10	22	61	1	4	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0004	1061	14	6	4	3	0	1	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0005	1061	11	0	4	0	3	4	copy fasta	DEGS1	chr1	224178240	224198441