JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEGS1_chr1_224178240_224198441	0/0	t0006	1055	6	0	0	5	0	1	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0007	1061	3	3	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0008	1061	3	3	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0009	1064	3	0	0	3	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0010	1055	2	0	0	2	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0011	1061	2	0	1	0	1	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0012	1061	2	2	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0013	1061	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0014	1061	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0015	1061	1	0	0	0	0	1	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0016	1061	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0017	1061	1	0	0	1	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0018	1061	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0019	1061	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS1_chr1_224178240_224198441	0/0	t0020	1061	1	1	0	0	0	0	copy fasta	DEGS1	chr1	224178240	224198441
DEGS2_chr14_100138957_100164645	0/0	t0001	2863	220	22	46	121	10	21	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0002	2860	53	5	10	26	3	9	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	1/1	t0003	2863	39	19	6	0	1	11	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0004	2863	36	4	2	29	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0005	2860	7	6	1	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0006	2862	6	0	2	4	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0007	2860	6	6	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0008	2860	6	6	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0009	2863	4	0	2	2	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0010	2863	4	4	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0011	2860	4	4	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0012	2863	4	0	2	0	1	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0013	2863	4	4	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0014	2860	3	3	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0015	2860	2	0	2	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0016	2860	2	0	0	2	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0017	2863	2	0	2	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0018	2863	2	0	2	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0019	2863	2	0	1	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0020	2884	2	2	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0021	2860	1	0	1	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0022	2860	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0023	2860	1	0	1	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0024	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0025	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0026	2863	1	0	0	0	1	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0027	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0028	2860	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0029	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0030	2860	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0031	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0032	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0033	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0034	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0035	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645