JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEGS2_chr14_100138957_100164645	0/0	t0036	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0037	2842	1	0	0	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0038	2862	1	0	1	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0039	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0040	2863	1	0	1	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0041	2863	1	0	0	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0042	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0043	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0044	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0045	2863	1	0	0	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0046	2860	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0047	2860	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0048	2860	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0049	2860	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0050	2863	1	0	0	1	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0051	2860	1	0	0	0	0	1	copy fasta	DEGS2	chr14	100138957	100164645
DEGS2_chr14_100138957_100164645	0/0	t0052	2863	1	1	0	0	0	0	copy fasta	DEGS2	chr14	100138957	100164645
DEK_chr6_18218860_18269530	1/0	t0001	2015	265	63	63	96	13	29	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0002	2015	54	3	9	33	1	8	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0003	2015	11	9	2	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0004	2015	11	0	0	11	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0005	2015	5	5	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0006	2015	3	0	0	3	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0007	2015	2	2	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0008	2015	2	2	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0009	2015	1	0	0	1	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0010	2015	1	0	1	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0011	2015	1	1	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0012	2015	1	1	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0013	2015	1	0	1	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0014	2015	1	0	0	1	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0015	2015	1	0	0	0	0	1	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/1	t0016	2015	1	0	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0017	2015	1	1	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0018	2015	1	0	0	1	0	0	copy fasta	DEK	chr6	18218860	18269530
DEK_chr6_18218860_18269530	0/0	t0019	2015	1	1	0	0	0	0	copy fasta	DEK	chr6	18218860	18269530
DELE1_chr5_141918871_141947047	0/0	t0001	3353	184	25	31	96	6	26	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	1/0	t0002	3360	93	15	27	33	10	7	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0003	3352	18	17	1	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0004	3353	17	1	3	6	2	5	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/1	t0005	3353	8	1	4	0	0	2	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0006	3353	6	6	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0007	3353	6	6	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0008	3355	5	5	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0009	3347	3	3	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0010	3348	3	1	2	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0011	3353	3	3	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0012	3353	2	2	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0013	3353	2	1	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0014	3353	2	0	0	0	0	2	copy fasta	DELE1	chr5	141918871	141947047