JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DELE1_chr5_141918871_141947047	0/0	t0015	3353	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0016	3353	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0017	3353	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0018	3347	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0019	3355	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0020	3353	1	0	1	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0021	3353	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0022	3360	1	0	1	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0023	3360	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0024	3353	1	0	0	1	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0025	3360	1	0	0	0	0	1	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0026	3353	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0027	3353	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0028	3352	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0029	3352	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DELE1_chr5_141918871_141947047	0/0	t0030	3352	1	1	0	0	0	0	copy fasta	DELE1	chr5	141918871	141947047
DENND10_chr10_119099113_119142984	0/0	t0001	1367	176	28	40	79	5	24	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/1	t0002	1367	74	12	16	35	4	6	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0003	1369	29	13	4	12	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0004	1368	19	4	5	10	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0005	1366	15	4	1	8	0	2	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0006	1367	10	9	1	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0007	1363	7	0	0	7	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0008	1368	6	6	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0009	1366	5	3	1	1	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0010	1368	5	5	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0011	1371	4	4	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0012	1364	4	0	0	4	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0013	1366	4	0	0	2	2	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0014	1367	3	0	0	3	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0015	1367	3	0	2	0	1	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0016	1369	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0017	1371	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0018	1369	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0019	1368	1	0	0	1	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	1/0	t0020	1368	1	0	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0021	1368	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0022	1367	1	0	0	1	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0023	1367	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0024	1367	1	0	0	1	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND10_chr10_119099113_119142984	0/0	t0025	1367	1	1	0	0	0	0	copy fasta	DENND10	chr10	119099113	119142984
DENND11_chr7_141651728_141707166	0/1	t0001	5942	139	24	11	76	12	15	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0002	5942	116	15	27	58	4	12	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0003	5942	22	5	2	8	0	7	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0004	5942	7	0	7	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0005	5942	5	5	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0006	5942	5	0	4	0	0	1	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0007	5942	4	0	4	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0008	5942	4	4	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0009	5942	3	0	0	3	0	0	copy fasta	DENND11	chr7	141651728	141707166