Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADRA2A_chr10_111072029_111085907	0/0	t0008	2482	8	0	0	8	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0009	2482	4	0	0	0	0	4	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0010	2482	4	0	0	4	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0011	2482	3	0	3	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0012	2482	2	0	2	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0013	2482	2	0	2	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0014	2482	2	0	0	2	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0015	2482	2	0	2	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0016	2482	1	1	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0017	2482	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0018	2482	1	0	0	0	1	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0019	2482	1	1	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0020	2482	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0021	2482	1	0	0	0	0	1	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0022	2482	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0023	2482	1	0	1	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0024	2482	1	1	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0025	2482	1	1	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0026	2482	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0027	2482	1	0	0	0	0	1	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	0/0	t0028	2482	1	0	0	1	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2A_chr10_111072029_111085907	1/0	t0029	2482	1	0	0	0	0	0	copy fasta	ADRA2A	chr10	111072029	111085907
ADRA2B_chr2_96107876_96121571	0/1	t0001	2345	195	54	26	80	6	28	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0002	2344	67	8	20	34	2	3	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0003	2344	46	0	13	29	0	4	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0004	2345	19	0	6	13	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0005	2345	10	2	2	5	0	1	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0006	2345	8	8	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0007	2344	8	0	8	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	1/0	t0008	2344	4	0	0	0	0	3	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0009	2345	4	4	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0010	2344	4	1	0	3	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0011	2345	3	3	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0012	2344	2	0	2	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0013	2345	2	0	0	2	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0014	2345	2	2	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0015	2345	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0016	2344	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0017	2344	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0018	2344	1	0	0	0	0	1	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0019	2344	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0020	2345	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0021	2344	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0022	2345	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0023	2345	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0024	2344	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0025	2345	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0026	2345	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0027	2345	1	0	1	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0028	2345	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571