JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND11_chr7_141651728_141707166	0/0	t0010	5942	3	0	1	0	0	2	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0011	5942	3	2	1	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0012	5942	3	3	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0013	5942	3	1	1	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0014	5942	2	2	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0015	5942	2	2	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0016	5942	2	2	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0017	5942	2	0	0	2	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0018	5942	2	0	2	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0019	5942	2	2	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0020	5942	1	0	1	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0021	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0022	5942	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0023	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0024	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0025	5942	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0026	5942	1	0	1	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0027	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0028	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0029	5942	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0030	5942	1	0	0	0	0	1	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0031	5942	1	0	0	1	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0032	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0033	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0034	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND11_chr7_141651728_141707166	0/0	t0035	5942	1	1	0	0	0	0	copy fasta	DENND11	chr7	141651728	141707166
DENND1A_chr9_123374658_123935126	1/1	t0001	1996	73	35	16	7	4	9	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0002	1996	23	3	2	14	0	4	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0003	1999	16	9	4	1	0	2	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0004	1996	14	4	4	4	0	2	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0005	1996	7	6	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0006	1996	4	4	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0007	1996	3	3	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0008	1996	3	3	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0009	1996	3	0	0	2	0	1	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0010	1996	3	3	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0011	1999	3	3	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0012	2000	2	1	0	1	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0013	1996	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0014	1996	1	0	0	0	0	1	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0015	1996	1	0	0	0	0	1	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0016	1996	1	0	0	0	0	1	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0017	1996	1	0	0	0	0	1	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0018	1996	1	0	0	1	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0019	1995	1	1	0	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1A_chr9_123374658_123935126	0/0	t0020	1995	1	0	1	0	0	0	copy fasta	DENND1A	chr9	123374658	123935126
DENND1B_chr1_197499748_197780480	0/1	t0001	6022	66	4	11	37	2	11	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	t0002	6022	52	2	9	33	1	7	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	t0003	6022	39	9	5	21	2	2	copy fasta	DENND1B	chr1	197499748	197780480
DENND1B_chr1_197499748_197780480	0/0	t0004	6023	11	1	4	3	1	2	copy fasta	DENND1B	chr1	197499748	197780480