JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND1C_chr19_6462207_6486787	0/0	t0002	390	6	4	2	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	t0003	390	4	0	3	0	0	1	copy fasta	DENND1C	chr19	6462207	6486787
DENND1C_chr19_6462207_6486787	0/0	t0004	390	1	1	0	0	0	0	copy fasta	DENND1C	chr19	6462207	6486787
DENND2A_chr7_140513420_140645813	0/0	t0001	845	103	16	27	38	5	17	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	1/1	t0002	845	91	27	28	13	4	17	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0003	844	45	32	9	0	1	3	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0004	845	3	3	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0005	844	3	3	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0006	845	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0007	844	2	2	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0008	844	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0009	844	1	0	0	0	0	1	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0010	845	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0011	845	1	1	0	0	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2A_chr7_140513420_140645813	0/0	t0012	845	1	0	0	1	0	0	copy fasta	DENND2A	chr7	140513420	140645813
DENND2B_chr11_8688352_8815674	1/1	t0001	928	207	56	38	87	9	15	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0002	932	117	28	18	54	4	13	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0003	928	15	1	1	6	1	6	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0004	928	3	0	1	0	0	2	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0005	936	3	3	0	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0006	928	2	2	0	0	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0007	928	2	0	0	2	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0008	928	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0009	932	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2B_chr11_8688352_8815674	0/0	t0010	932	1	0	0	1	0	0	copy fasta	DENND2B	chr11	8688352	8815674
DENND2C_chr1_114577850_114675049	0/0	t0001	3393	109	22	21	51	4	11	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	1/0	t0002	3391	63	0	12	47	0	3	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0003	3390	17	1	8	0	1	7	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/1	t0004	3391	17	4	4	2	1	5	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0005	3392	7	0	2	5	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0006	3397	6	1	2	0	1	2	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0007	3391	6	1	3	0	0	2	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0008	3395	5	3	0	1	1	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0009	3401	5	5	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0010	3393	4	0	2	2	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0011	3404	4	4	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0012	3398	4	3	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0013	3396	3	0	2	0	0	1	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0014	3393	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0015	3393	2	1	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0016	3393	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0017	3397	2	0	0	2	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0018	3394	2	0	0	2	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0019	3403	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0020	3409	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0021	3401	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0022	3396	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0023	3392	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0024	3399	2	2	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0025	3408	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049