JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND2C_chr1_114577850_114675049	0/0	t0026	3393	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0027	3393	1	0	0	0	0	1	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0028	3393	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0029	3395	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0030	3395	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0031	3392	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0032	3394	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0033	3392	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0034	3396	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0035	3399	1	0	0	0	1	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0036	3394	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0037	3399	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0038	3394	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0039	3392	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0040	3395	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0041	3393	1	0	0	0	1	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0042	3391	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0043	3391	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0044	3393	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0045	3395	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0046	3398	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0047	3390	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0048	3395	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0049	3393	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0050	3391	1	0	1	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0051	3398	1	1	0	0	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2C_chr1_114577850_114675049	0/0	t0052	3391	1	0	0	1	0	0	copy fasta	DENND2C	chr1	114577850	114675049
DENND2D_chr1_111180969_111205646	0/0	t0001	1825	203	40	44	86	5	28	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	1/1	t0002	1824	125	13	16	79	6	9	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0003	1824	110	24	20	53	5	8	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0004	1824	11	8	0	3	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0005	1825	3	0	0	0	0	3	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0006	1825	3	3	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0007	1825	3	3	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0008	1821	2	2	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0009	1825	2	2	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0010	1824	1	1	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0011	1825	1	0	0	0	0	1	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0012	1825	1	1	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0013	1821	1	0	1	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0014	1824	1	0	1	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0015	1824	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0016	1825	1	0	0	0	0	1	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0017	1825	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0018	1825	1	0	0	1	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND2D_chr1_111180969_111205646	0/0	t0019	1824	1	1	0	0	0	0	copy fasta	DENND2D	chr1	111180969	111205646
DENND3_chr8_141123589_141200804	0/0	t0001	1689	183	34	32	88	8	21	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	1/0	t0002	1691	112	20	35	31	4	21	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0003	1691	28	2	3	20	1	2	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0004	1689	17	2	4	8	0	3	copy fasta	DENND3	chr8	141123589	141200804