JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND3_chr8_141123589_141200804	0/1	t0005	1691	7	0	3	0	2	1	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0006	1691	7	7	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0007	1690	5	5	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0008	1690	5	5	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0009	1691	3	3	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0010	1689	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0011	1689	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0012	1691	3	0	0	3	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0013	1689	2	1	0	0	1	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0014	1689	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0015	1689	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0016	1689	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0017	1689	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0018	1691	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0019	1691	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0020	1691	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0021	1689	1	0	1	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0022	1691	1	0	0	1	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0023	1690	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0024	1689	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND3_chr8_141123589_141200804	0/0	t0025	1689	1	1	0	0	0	0	copy fasta	DENND3	chr8	141123589	141200804
DENND4A_chr15_65654123_65797293	0/1	t0001	3114	42	4	12	16	3	6	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0002	3115	39	4	5	27	1	2	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0003	3115	33	3	6	17	2	5	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0004	3116	25	1	4	16	0	4	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0005	3112	21	7	5	6	0	3	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0006	3111	20	5	7	6	0	2	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0007	3109	10	10	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0008	3117	9	0	1	8	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0009	3110	9	6	0	0	3	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0010	3112	9	6	2	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0011	3118	6	2	0	4	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0012	3112	5	2	0	0	0	3	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0013	3117	5	2	0	3	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0014	3114	4	1	0	2	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0015	3111	4	2	0	0	1	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0016	3109	4	4	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0017	3113	4	3	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0018	3112	4	4	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0019	3112	3	0	2	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0020	3114	3	2	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0021	3114	3	1	2	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0022	3119	2	2	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0023	3101	2	0	0	0	0	2	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0024	3113	2	0	2	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0025	3118	2	0	0	2	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0026	3116	2	0	1	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0027	3103	2	0	0	2	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0028	3114	2	2	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0029	3113	2	0	1	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293