JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND4A_chr15_65654123_65797293	0/0	t0030	3116	2	0	0	0	1	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0031	3111	2	2	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0032	3118	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0033	3117	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0034	3100	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0035	3114	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0036	3115	1	0	1	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0037	3113	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0038	3114	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0039	3111	1	0	0	0	1	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0040	3112	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0041	3119	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0042	3113	1	0	1	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	1/0	t0043	3114	1	0	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0044	3116	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0045	3115	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0046	3115	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0047	3113	1	0	0	0	0	1	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0048	3112	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0049	3112	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0050	3115	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0051	3113	1	1	0	0	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0052	3116	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4A_chr15_65654123_65797293	0/0	t0053	3115	1	0	0	1	0	0	copy fasta	DENND4A	chr15	65654123	65797293
DENND4B_chr1_153924501_153951718	1/1	t0001	1238	372	76	78	169	10	37	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	t0002	1238	7	7	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	t0003	1238	3	3	0	0	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	t0004	1238	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	t0005	1238	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	t0006	1238	1	0	0	0	0	1	copy fasta	DENND4B	chr1	153924501	153951718
DENND4B_chr1_153924501_153951718	0/0	t0007	1238	1	0	0	1	0	0	copy fasta	DENND4B	chr1	153924501	153951718
DENND4C_chr9_19225693_19379281	0/0	t0001	2267	90	20	22	30	4	14	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/1	t0002	2267	71	10	23	27	4	6	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0003	2267	13	12	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0004	2268	11	0	2	9	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0005	2267	11	4	6	0	1	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0006	2271	11	10	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	1/0	t0007	2267	10	1	0	7	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0008	2268	9	0	1	7	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0009	2266	8	5	1	1	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0010	2267	7	1	0	3	1	2	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0011	2271	6	6	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0012	2267	4	0	0	3	1	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0013	2277	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0014	2268	3	0	0	1	0	2	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0015	2267	3	3	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0016	2266	3	0	0	1	1	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0017	2276	2	2	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0018	2268	2	2	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0019	2267	2	0	0	0	2	0	copy fasta	DENND4C	chr9	19225693	19379281