JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND4C_chr9_19225693_19379281	0/0	t0020	2266	2	1	0	0	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0021	2267	2	0	0	2	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0022	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0023	2278	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0024	2268	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0025	2267	1	0	0	0	1	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0026	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0027	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0028	2266	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0029	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0030	2266	1	0	0	0	1	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0031	2271	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0032	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0033	2266	1	0	0	0	0	1	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0034	2268	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0035	2266	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0036	2268	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0037	2267	1	0	0	1	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0038	2267	1	0	1	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0039	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND4C_chr9_19225693_19379281	0/0	t0040	2267	1	1	0	0	0	0	copy fasta	DENND4C	chr9	19225693	19379281
DENND5A_chr11_9133825_9270350	1/1	t0001	1128	188	54	36	66	10	20	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0002	1128	33	12	6	9	0	6	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0003	1126	15	8	2	0	0	5	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0004	1129	12	0	4	3	1	4	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0005	1128	11	9	2	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0006	1129	6	1	3	2	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0007	1128	5	0	3	0	1	1	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0008	1128	3	0	1	0	0	2	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0009	1128	2	2	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0010	1126	2	2	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0011	1128	1	0	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0012	1128	1	0	0	0	1	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0013	1128	1	0	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0014	1128	1	0	0	0	1	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0015	1128	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0016	1126	1	1	0	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5A_chr11_9133825_9270350	0/0	t0017	1128	1	0	1	0	0	0	copy fasta	DENND5A	chr11	9133825	9270350
DENND5B_chr12_31377226_31596136	0/1	t0001	5682	74	11	8	42	4	8	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0002	5682	51	4	9	31	4	3	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0003	5681	32	3	6	15	1	7	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0004	5682	25	7	11	0	2	5	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	1/0	t0005	5682	21	15	1	1	0	3	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0006	5682	14	0	1	10	0	3	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0007	5682	7	7	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0008	5682	7	7	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0009	5682	7	6	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0010	5682	4	4	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0011	5683	4	0	0	2	1	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0012	5682	3	0	0	3	0	0	copy fasta	DENND5B	chr12	31377226	31596136