JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND5B_chr12_31377226_31596136	0/0	t0013	5682	3	0	0	3	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0014	5682	3	3	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0015	5682	3	0	0	3	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0016	5682	3	3	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0017	5682	2	2	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0018	5682	2	0	2	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0019	5682	2	0	0	2	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0020	5682	2	0	1	0	1	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0021	5682	2	2	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0022	5683	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0023	5683	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0024	5683	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0025	5683	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0026	5683	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0027	5683	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0028	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0029	5682	1	0	0	0	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0030	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0031	5682	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0032	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0033	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0034	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0035	5682	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0036	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0037	5682	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0038	5682	1	0	0	0	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0039	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0040	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0041	5681	1	0	0	0	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0042	5681	1	0	0	0	1	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0043	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0044	5682	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0045	5682	1	0	0	1	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0046	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0047	5682	1	0	0	0	0	1	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0048	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0049	5682	1	0	1	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0050	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0051	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0052	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0053	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0054	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0055	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0056	5701	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0057	5682	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND5B_chr12_31377226_31596136	0/0	t0058	5683	1	1	0	0	0	0	copy fasta	DENND5B	chr12	31377226	31596136
DENND6A_chr3_57620454_57698077	0/0	t0001	2820	106	9	24	50	6	17	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0002	2818	76	2	10	57	3	4	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	1/1	t0003	2820	56	29	16	0	3	6	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0004	2820	40	11	6	14	0	9	copy fasta	DENND6A	chr3	57620454	57698077