JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND6A_chr3_57620454_57698077	0/0	t0005	2820	24	22	2	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0006	2820	5	4	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0007	2820	4	3	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0008	2820	4	3	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0009	2820	3	2	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0010	2820	2	2	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0011	2820	2	2	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0012	2820	2	0	0	0	0	2	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0013	2818	2	0	0	2	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0014	2820	1	1	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0015	2820	1	1	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0016	2820	1	0	0	1	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0017	2820	1	0	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0018	2820	1	1	0	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6A_chr3_57620454_57698077	0/0	t0019	2818	1	0	1	0	0	0	copy fasta	DENND6A	chr3	57620454	57698077
DENND6B_chr22_50304030_50332012	0/0	t0001	3134	91	1	25	40	7	18	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/1	t0002	3134	53	2	21	24	0	5	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	1/0	t0003	3134	53	13	7	24	3	5	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0004	3134	31	23	0	8	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0005	3134	14	0	0	12	1	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0006	3134	10	10	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0007	3134	7	6	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0008	3134	5	4	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0009	3135	4	2	0	2	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0010	3134	4	0	0	4	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0011	3134	3	3	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0012	3134	3	3	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0013	3134	3	2	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0014	3134	3	0	0	3	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0015	3134	3	1	2	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0016	3135	2	0	0	2	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0017	3134	2	2	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0018	3134	2	2	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0019	3134	2	0	1	0	1	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0020	3134	2	2	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0021	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0022	3134	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0023	3135	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0024	3135	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0025	3135	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0026	3136	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0027	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0028	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0029	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0030	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0031	3136	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0032	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0033	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0034	3134	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0035	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012