JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENND6B_chr22_50304030_50332012	0/0	t0036	3134	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0037	3135	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0038	3134	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0039	3136	1	0	0	0	0	1	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0040	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0041	3135	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0042	3135	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0043	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0044	3136	1	0	1	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0045	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0046	3134	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0047	3135	1	0	0	1	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0048	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENND6B_chr22_50304030_50332012	0/0	t0049	3134	1	1	0	0	0	0	copy fasta	DENND6B	chr22	50304030	50332012
DENR_chr12_122747824_122776064	0/1	t0001	2125	185	50	47	62	11	14	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0002	2137	49	0	4	39	0	6	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0003	2097	20	0	0	19	0	1	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0004	2125	15	1	7	0	3	4	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	1/0	t0005	2123	13	3	1	2	0	6	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0006	2186	10	9	1	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0007	2125	10	4	0	0	1	5	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0008	2125	7	0	0	7	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0009	2137	6	0	0	6	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0010	2151	4	4	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0011	2152	3	3	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0012	2253	3	3	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0013	2137	2	0	0	0	0	2	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0014	2174	2	2	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0015	2197	2	2	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0016	2147	2	0	1	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0017	2125	2	0	2	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0018	2135	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0019	2137	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0020	2137	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0021	2137	1	0	0	0	1	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0022	2115	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0023	2177	1	0	0	0	0	1	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0024	2262	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0025	2152	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0026	2147	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0027	2172	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0028	2164	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0029	2148	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0030	2123	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0031	2097	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0032	2097	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0033	2215	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0034	2149	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0035	2125	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0036	2125	1	0	0	0	0	1	copy fasta	DENR	chr12	122747824	122776064