Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADRA2B_chr2_96107876_96121571	0/0	t0029	2345	1	0	0	1	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2B_chr2_96107876_96121571	0/0	t0030	2345	1	1	0	0	0	0	copy fasta	ADRA2B	chr2	96107876	96121571
ADRA2C_chr4_3761385_3773526	0/1	t0001	775	149	19	40	55	13	21	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0002	775	136	48	15	58	2	13	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	1/0	t0003	754	106	14	20	58	3	10	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0004	775	12	10	2	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0005	775	4	0	4	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0006	775	3	3	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0007	775	2	1	1	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0008	754	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0009	775	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0010	775	1	0	0	0	0	1	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0011	775	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0012	775	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0013	754	1	0	0	0	0	1	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0014	775	1	0	0	1	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRA2C_chr4_3761385_3773526	0/0	t0015	775	1	1	0	0	0	0	copy fasta	ADRA2C	chr4	3761385	3773526
ADRB1_chr10_114038866_114051904	0/1	t0001	1601	151	13	33	79	10	15	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	1/0	t0002	1606	73	25	9	30	2	6	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0003	1607	48	16	10	14	4	4	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0004	1609	32	1	12	18	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0005	1605	14	10	1	3	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0006	1610	12	1	2	6	0	3	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0007	1602	8	1	2	4	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0008	1607	6	1	3	2	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0009	1608	6	1	3	1	1	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0010	1607	5	0	2	0	0	3	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0011	1608	5	5	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0012	1611	5	3	0	2	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0013	1608	4	2	0	0	1	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0014	1601	3	3	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0015	1609	3	3	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0016	1607	3	2	1	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0017	1608	3	1	1	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0018	1606	3	3	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0019	1601	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0020	1601	1	0	0	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0021	1605	1	0	0	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0022	1607	1	0	1	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0023	1609	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0024	1609	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0025	1610	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0026	1609	1	0	0	1	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0027	1607	1	1	0	0	0	0	copy fasta	ADRB1	chr10	114038866	114051904
ADRB1_chr10_114038866_114051904	0/0	t0028	1606	1	0	0	0	0	1	copy fasta	ADRB1	chr10	114038866	114051904
ADRB2_chr5_148821611_148833623	0/0	t0001	774	201	47	22	106	6	20	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0002	773	74	6	16	41	2	9	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	1/1	t0003	772	43	6	25	0	5	5	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0004	775	34	2	4	25	0	3	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0005	772	22	10	6	4	0	2	copy fasta	ADRB2	chr5	148821611	148833623