JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DENR_chr12_122747824_122776064	0/0	t0037	2125	1	0	1	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0038	2121	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0039	2125	1	0	0	0	0	1	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0040	2125	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0041	2145	1	0	1	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0042	2123	1	0	0	0	0	1	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0043	2163	1	0	1	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0044	2176	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0045	2154	1	1	0	0	0	0	copy fasta	DENR	chr12	122747824	122776064
DENR_chr12_122747824_122776064	0/0	t0046	2127	1	0	0	1	0	0	copy fasta	DENR	chr12	122747824	122776064
DEPDC1B_chr5_60591912_60705166	1/1	t0001	915	277	64	53	114	14	30	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	t0002	915	7	7	0	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	t0003	915	2	0	0	2	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	t0004	915	2	0	0	2	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	t0005	915	2	1	1	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	t0006	915	1	1	0	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1B_chr5_60591912_60705166	0/0	t0007	915	1	1	0	0	0	0	copy fasta	DEPDC1B	chr5	60591912	60705166
DEPDC1_chr1_68469152_68502082	0/0	t0001	2864	121	26	25	58	1	11	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0002	2866	75	16	14	28	10	7	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0003	2864	38	3	10	15	4	6	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0004	2864	30	0	8	20	0	2	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0005	2866	23	7	1	12	1	2	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/1	t0006	2864	21	5	2	8	0	5	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0007	2864	21	19	2	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0008	2866	5	4	1	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0009	2864	4	4	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0010	2864	3	0	0	3	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0011	2866	3	3	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0012	2866	3	0	0	0	0	3	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0013	2866	2	2	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0014	2866	2	2	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0015	2866	2	2	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0016	2864	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0017	2864	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0018	2866	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0019	2866	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0020	2864	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0021	2864	1	1	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	1/0	t0022	2864	1	0	0	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0023	2866	1	0	0	0	0	1	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0024	2866	1	0	0	1	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0025	2866	1	0	0	0	0	1	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC1_chr1_68469152_68502082	0/0	t0026	2866	1	0	1	0	0	0	copy fasta	DEPDC1	chr1	68469152	68502082
DEPDC4_chr12_100235062_100272079	1/1	t0001	1834	285	51	68	116	13	35	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0002	1829	13	13	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0003	1834	12	6	0	3	0	3	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0004	1834	7	7	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0005	1834	7	3	3	0	1	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0006	1834	5	0	0	5	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0007	1834	5	0	0	5	0	0	copy fasta	DEPDC4	chr12	100235062	100272079