JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEPDC4_chr12_100235062_100272079	0/0	t0008	1835	4	4	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0009	1833	3	3	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0010	1834	3	2	1	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0011	1834	3	3	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0012	1834	2	0	0	2	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0013	1834	2	0	2	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0014	1834	1	0	0	1	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0015	1829	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0016	1834	1	0	0	0	0	1	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0017	1834	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0018	1834	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0019	1834	1	1	0	0	0	0	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC4_chr12_100235062_100272079	0/0	t0020	1834	1	0	0	0	0	1	copy fasta	DEPDC4	chr12	100235062	100272079
DEPDC5_chr22_31749019_31913033	0/1	t0001	1744	103	23	26	33	5	15	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0002	1745	16	9	3	4	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0003	1744	13	4	6	2	0	1	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0004	1745	13	0	4	6	0	3	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0005	1745	11	11	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0006	1744	8	3	3	0	0	2	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0007	1744	8	7	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0008	1744	7	7	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0009	1751	4	2	0	0	2	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0010	1744	3	2	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0011	1744	2	0	0	2	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0012	1748	2	2	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0013	1748	2	0	1	0	0	1	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0014	1749	2	1	0	0	1	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0015	1744	2	1	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	1/0	t0016	1743	1	0	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0017	1744	1	0	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0018	1744	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0019	1745	1	0	0	1	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0020	1745	1	0	1	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0021	1740	1	0	0	1	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0022	1741	1	0	0	1	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC5_chr22_31749019_31913033	0/0	t0023	1740	1	1	0	0	0	0	copy fasta	DEPDC5	chr22	31749019	31913033
DEPDC7_chr11_33010878_33038582	1/1	t0001	206	261	60	42	116	9	32	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	t0002	206	156	29	30	86	7	4	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	t0003	206	3	0	1	0	0	2	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	t0004	206	1	1	0	0	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPDC7_chr11_33010878_33038582	0/0	t0005	79	1	0	1	0	0	0	copy fasta	DEPDC7	chr11	33010878	33038582
DEPP1_chr10_44971128_44983809	0/1	t0001	1482	284	33	55	153	11	31	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	1/0	t0002	1482	85	21	9	39	3	12	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0003	1482	18	18	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0004	1482	8	7	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0005	1482	6	4	2	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0006	1482	4	3	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0007	1482	3	3	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0008	1482	2	2	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0009	1482	2	1	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809