JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEPP1_chr10_44971128_44983809	0/0	t0010	1482	2	2	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0011	1482	2	0	2	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0012	1482	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0013	1482	1	0	0	0	0	1	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0014	1482	1	0	0	1	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0015	1482	1	0	0	1	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0016	1482	1	0	1	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0017	1482	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0018	1482	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPP1_chr10_44971128_44983809	0/0	t0019	1482	1	1	0	0	0	0	copy fasta	DEPP1	chr10	44971128	44983809
DEPTOR_chr8_119868722_120055918	0/1	t0001	1342	44	14	8	5	2	14	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0002	1340	37	8	11	8	3	7	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0003	1340	34	29	4	0	0	1	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0004	1342	14	5	3	1	0	5	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0005	1340	14	0	3	4	2	5	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0006	1341	11	11	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0007	1340	10	1	0	2	2	5	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0008	1342	7	0	0	0	0	7	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0009	1342	6	4	2	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0010	1340	4	0	1	0	2	1	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0011	1342	4	4	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0012	1340	2	0	1	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	1/0	t0013	1340	2	1	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0014	1340	1	0	0	0	1	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0015	1340	1	0	0	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0016	1340	1	0	1	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0017	1340	1	0	1	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0018	1342	1	0	0	0	0	1	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0019	1342	1	1	0	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0020	1342	1	0	1	0	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0021	1340	1	0	0	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DEPTOR_chr8_119868722_120055918	0/0	t0022	1340	1	0	0	1	0	0	copy fasta	DEPTOR	chr8	119868722	120055918
DERA_chr12_15906332_16042381	1/1	t0001	688	206	58	49	67	4	26	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	t0002	688	27	1	1	25	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	t0003	688	15	14	1	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	t0004	688	5	5	0	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	t0005	688	4	3	1	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERA_chr12_15906332_16042381	0/0	t0006	688	1	1	0	0	0	0	copy fasta	DERA	chr12	15906332	16042381
DERL1_chr8_123008170_123047302	1/1	t0001	2458	145	32	29	63	2	17	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0002	2458	113	5	31	59	5	13	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0003	2458	61	11	4	41	1	4	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0004	2458	27	2	3	20	1	1	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0005	2459	13	1	5	4	1	2	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0006	2458	11	10	1	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0007	2459	6	0	0	6	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0008	2458	5	5	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0009	2458	4	0	0	4	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0010	2459	4	4	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0011	2458	4	3	1	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0012	2459	3	3	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302