JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DERL1_chr8_123008170_123047302	0/0	t0013	2459	3	3	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0014	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0015	2458	1	0	1	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0016	2458	1	0	1	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0017	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0018	2459	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0019	2458	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0020	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0021	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0022	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0023	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0024	2459	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0025	2458	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0026	2458	1	0	0	0	0	1	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0027	2458	1	1	0	0	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL1_chr8_123008170_123047302	0/0	t0028	2458	1	0	0	1	0	0	copy fasta	DERL1	chr8	123008170	123047302
DERL2_chr17_5466254_5491178	0/1	t0001	3449	238	35	22	154	8	18	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	1/0	t0002	3448	65	9	33	4	2	16	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0003	3449	48	19	9	15	2	3	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0004	3450	13	6	2	3	0	2	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0005	3449	10	0	4	6	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0006	3449	9	0	0	9	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0007	3450	6	5	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0008	3448	6	6	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0009	3448	3	0	2	0	0	1	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0010	3450	2	2	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0011	3449	2	0	0	2	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0012	3449	2	2	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0013	3449	2	0	2	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0014	3450	2	2	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0015	3450	2	2	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0016	3449	1	0	0	0	1	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0017	3450	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0018	3450	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0019	3450	1	0	0	0	0	1	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0020	3448	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0021	3448	1	0	0	0	1	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0022	3448	1	0	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0023	3448	1	0	1	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0024	3449	1	0	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0025	3449	1	0	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0026	3449	1	0	0	0	0	1	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0027	3449	1	0	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0028	3449	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0029	3449	1	0	1	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0030	3449	1	0	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0031	3449	1	0	0	1	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0032	3448	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL2_chr17_5466254_5491178	0/0	t0033	3449	1	1	0	0	0	0	copy fasta	DERL2	chr17	5466254	5491178
DERL3_chr22_23829503_23844006	0/1	t0001	2385	134	2	42	67	4	18	copy fasta	DERL3	chr22	23829503	23844006