JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DERL3_chr22_23829503_23844006	0/0	t0002	2386	81	6	4	63	1	7	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0003	2385	67	12	8	41	3	3	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0004	2381	37	10	6	7	4	10	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0005	2374	32	11	10	6	4	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0006	2385	17	15	2	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0007	2385	16	15	1	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0008	2370	10	0	0	7	0	3	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0009	2374	6	5	1	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0010	2385	3	3	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0011	2385	2	2	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0012	2385	2	2	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0013	2381	2	2	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0014	2374	2	0	2	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0015	2385	2	1	1	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0016	2385	2	2	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0017	2385	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0018	2385	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0019	2381	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0020	2385	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0021	2370	1	0	0	0	0	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0022	2385	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0023	2385	1	0	0	1	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0024	2385	1	0	0	1	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0025	2374	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0026	2374	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0027	2385	1	0	0	1	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0028	2385	1	0	1	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0029	2385	1	0	0	0	0	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0030	2386	1	1	0	0	0	0	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0031	2370	1	0	0	0	0	1	copy fasta	DERL3	chr22	23829503	23844006
DERL3_chr22_23829503_23844006	0/0	t0032	2381	1	0	0	0	0	1	copy fasta	DERL3	chr22	23829503	23844006
DERPC_chr16_69113010_69137588	1/1	t0001	1229	338	92	71	112	15	46	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	t0002	1229	5	1	3	0	1	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	t0003	1229	1	0	0	1	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	t0004	1229	1	1	0	0	0	0	copy fasta	DERPC	chr16	69113010	69137588
DERPC_chr16_69113010_69137588	0/0	t0005	1229	1	0	0	1	0	0	copy fasta	DERPC	chr16	69113010	69137588
DESI1_chr22_41593028_41626043	1/0	t0001	3274	105	26	13	56	3	6	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/1	t0002	3271	74	14	12	30	6	11	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0003	3274	41	2	19	7	3	10	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0004	3274	18	15	3	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0005	3274	12	1	4	7	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0006	3274	8	0	0	8	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0007	3274	6	0	2	0	0	4	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0008	3274	6	6	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0009	3274	5	5	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0010	3274	5	4	1	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0011	3274	5	5	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0012	3274	3	3	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0013	3271	2	0	0	2	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0014	3274	2	2	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043