JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DESI1_chr22_41593028_41626043	0/0	t0015	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0016	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0017	3274	1	0	0	0	0	1	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0018	3271	1	0	1	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0019	3274	1	0	0	0	0	1	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0020	3274	1	0	0	0	0	1	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0021	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0022	3274	1	0	0	1	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0023	3271	1	0	1	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0024	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0025	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0026	3271	1	0	0	1	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0027	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0028	3274	1	1	0	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0029	3271	1	0	1	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI1_chr22_41593028_41626043	0/0	t0030	3271	1	0	1	0	0	0	copy fasta	DESI1	chr22	41593028	41626043
DESI2_chr1_244648126_244714033	1/1	t0001	3433	221	47	48	94	12	18	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0002	3433	103	24	16	52	1	10	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0003	3433	6	6	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0004	3433	6	0	2	4	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0005	3433	4	4	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0006	3433	2	0	0	2	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0007	3433	2	0	0	2	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0008	3433	1	0	0	0	1	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0009	3405	1	0	1	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0010	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0011	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0012	3433	1	0	0	1	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0013	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0014	3433	1	0	0	0	0	1	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0015	3433	1	0	0	0	0	1	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0016	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0017	3433	1	0	0	1	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0018	3433	1	0	0	1	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0019	3433	1	0	0	1	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0020	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0021	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0022	3433	1	1	0	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DESI2_chr1_244648126_244714033	0/0	t0023	3433	1	0	1	0	0	0	copy fasta	DESI2	chr1	244648126	244714033
DES_chr2_219413377_219431734	1/1	t0001	831	345	66	76	157	12	32	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0002	844	10	10	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0003	831	7	7	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0004	831	5	5	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0005	831	3	3	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0006	831	2	0	0	2	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0007	831	1	0	0	1	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0008	831	1	0	0	1	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0009	831	1	0	0	1	0	0	copy fasta	DES	chr2	219413377	219431734
DES_chr2_219413377_219431734	0/0	t0010	831	1	1	0	0	0	0	copy fasta	DES	chr2	219413377	219431734
DET1_chr15_88507480_88551681	1/1	t0001	624	207	72	25	82	7	19	copy fasta	DET1	chr15	88507480	88551681