JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DET1_chr15_88507480_88551681	0/0	t0002	624	98	19	22	31	7	19	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	t0003	624	93	4	16	66	2	5	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	t0004	624	2	0	1	1	0	0	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	t0005	624	1	0	0	0	0	1	copy fasta	DET1	chr15	88507480	88551681
DET1_chr15_88507480_88551681	0/0	t0006	624	1	1	0	0	0	0	copy fasta	DET1	chr15	88507480	88551681
DEUP1_chr11_93325742_93443470	1/0	t0001	827	70	15	22	24	0	8	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/1	t0002	829	46	6	1	31	1	6	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0003	829	46	10	5	24	3	4	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0004	827	31	0	4	25	0	2	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0005	828	28	9	8	2	3	6	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0006	829	28	2	3	16	1	6	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0007	830	22	2	10	9	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0008	827	17	15	2	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0009	829	16	1	2	11	1	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0010	830	14	3	0	7	0	4	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0011	830	14	0	2	10	0	2	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0012	828	6	5	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0013	828	4	2	1	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0014	830	3	0	0	3	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0015	827	2	2	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0016	830	2	1	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0017	827	2	2	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0018	828	2	1	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0019	829	2	0	2	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0020	829	2	0	0	2	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0021	827	2	2	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0022	827	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0023	827	1	1	0	0	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0024	827	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0025	828	1	0	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0026	829	1	0	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0027	829	1	0	0	0	1	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0028	830	1	0	0	1	0	0	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0029	827	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEUP1_chr11_93325742_93443470	0/0	t0030	827	1	0	0	0	0	1	copy fasta	DEUP1	chr11	93325742	93443470
DEXI_chr16_10923891_10947468	0/1	t0001	1282	136	5	27	86	9	8	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0002	1282	109	20	16	54	0	19	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	1/0	t0003	1282	66	36	7	19	1	2	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0004	1282	61	4	12	33	5	7	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0005	1282	44	14	7	17	3	3	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0006	1282	7	1	0	4	0	2	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0007	1283	6	0	1	2	0	3	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0008	1283	3	3	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0009	1282	2	2	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0010	1282	2	0	2	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0011	1282	2	0	0	2	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0012	1282	1	0	0	1	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0013	1283	1	0	1	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0014	1283	1	0	0	0	0	1	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0015	1283	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468