JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DEXI_chr16_10923891_10947468	0/0	t0016	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0017	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0018	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0019	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0020	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0021	1283	1	0	0	1	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0022	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0023	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0024	1282	1	1	0	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0025	1282	1	0	1	0	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0026	1282	1	0	0	1	0	0	copy fasta	DEXI	chr16	10923891	10947468
DEXI_chr16_10923891_10947468	0/0	t0027	1282	1	0	0	0	0	1	copy fasta	DEXI	chr16	10923891	10947468
DFFA_chr1_10451522_10477529	0/1	t0001	5037	98	5	16	66	2	8	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0002	5037	78	4	22	42	3	7	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	1/0	t0003	5040	46	7	10	21	0	7	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0004	5038	22	2	11	0	4	5	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0005	5037	11	9	2	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0006	5037	7	5	0	0	0	2	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0007	5040	6	6	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0008	5040	5	0	0	5	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0009	5039	5	5	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0010	5040	5	5	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0011	5037	5	5	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0012	5038	5	0	1	4	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0013	5038	5	0	3	1	1	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0014	5038	5	0	0	5	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0015	5036	5	0	1	4	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0016	5036	5	4	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0017	5036	4	0	1	3	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0018	5038	3	1	2	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0019	5037	3	0	0	3	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0020	5039	3	3	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0021	5039	3	0	0	1	2	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0022	5038	3	0	1	2	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0023	5039	3	0	0	3	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0024	5037	3	0	0	3	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0025	5040	2	0	0	2	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0026	5037	2	2	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0027	5035	2	0	0	2	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0028	5036	2	0	0	2	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0029	5038	2	1	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0030	5037	2	2	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0031	5037	2	2	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0032	5035	2	2	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0033	5038	2	0	0	1	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0034	5039	2	2	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0035	5037	2	2	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0036	5040	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0037	5040	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0038	5039	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529