JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DFFA_chr1_10451522_10477529	0/0	t0039	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0040	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0041	5038	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0042	5038	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0043	5038	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0044	5039	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0045	5040	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0046	5040	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0047	5041	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0048	5039	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0049	5038	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0050	5014	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0051	5039	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0052	5040	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0053	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0054	5040	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0055	5038	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0056	5038	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0057	5038	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0058	5037	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0059	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0060	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0061	5039	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0062	5039	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0063	5039	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0064	5041	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0065	5039	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0066	5039	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0067	5037	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0068	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0069	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0070	5039	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0071	5038	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0072	5037	1	0	0	0	1	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0073	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0074	5037	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0075	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0076	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0077	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0078	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0079	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0080	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0081	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0082	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0083	5036	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0084	5036	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0085	5035	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0086	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0087	5037	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0088	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529