JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DFFA_chr1_10451522_10477529	0/0	t0089	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0090	5036	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0091	5037	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0092	5039	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0093	5037	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0094	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0095	5037	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0096	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0097	5038	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0098	5036	1	0	0	0	1	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0099	5039	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0100	5037	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0101	5036	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0102	5038	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0103	5038	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0104	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0105	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0106	5034	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0107	5036	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0108	5036	1	1	0	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0109	5040	1	0	1	0	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0110	5040	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0111	5040	1	0	0	0	0	1	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0112	5040	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFA_chr1_10451522_10477529	0/0	t0113	5037	1	0	0	1	0	0	copy fasta	DFFA	chr1	10451522	10477529
DFFB_chr1_3852476_3890429	1/1	t0001	1817	82	17	13	32	3	15	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0002	1817	56	6	2	42	1	5	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0003	1817	46	8	13	16	2	7	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0004	1817	38	19	8	8	1	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0005	1817	36	0	10	26	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0006	1817	27	4	5	11	2	5	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0007	1817	20	11	2	5	0	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0008	1817	13	6	5	0	0	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0009	1817	10	0	2	1	4	3	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0010	1817	9	0	5	1	1	2	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0011	1817	9	0	0	9	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0012	1817	9	6	1	2	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0013	1817	8	0	7	0	0	1	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0014	1817	5	0	0	5	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0015	1817	4	0	4	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0016	1817	4	4	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0017	1817	3	0	0	3	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0018	1817	2	2	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0019	1817	2	2	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0020	1817	2	1	1	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0021	1817	2	0	0	2	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0022	1817	2	0	2	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0023	1817	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0024	1817	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0025	1817	1	0	0	0	0	1	copy fasta	DFFB	chr1	3852476	3890429