Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

Sort By

Choose a field to sort by.

Order by

Ascending / Descending.

Show

Results per page.

regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADRB2_chr5_148821611_148833623	0/0	t0006	771	17	1	0	15	1	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0007	774	12	2	2	5	0	3	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0008	773	10	9	1	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0009	771	8	1	0	6	1	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0010	773	5	0	2	0	2	1	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0011	772	4	0	0	4	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0012	772	4	4	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0013	774	3	3	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0014	774	3	3	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0015	775	2	1	0	0	0	1	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0016	774	2	1	0	0	1	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0017	772	1	1	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0018	773	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0019	772	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0020	774	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0021	775	1	1	0	0	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0022	774	1	0	0	0	0	1	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0023	774	1	0	0	0	0	1	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0024	774	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0025	774	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB2_chr5_148821611_148833623	0/0	t0026	773	1	0	0	1	0	0	copy fasta	ADRB2	chr5	148821611	148833623
ADRB3_chr8_37957990_37971599	1/1	t0001	1359	267	50	49	127	7	32	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0002	1357	45	0	6	29	1	9	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0003	1359	16	10	0	6	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0004	1359	9	9	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0005	1361	5	5	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0006	1359	5	5	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0007	1361	4	0	0	4	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0008	1359	3	0	0	2	0	1	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0009	1359	3	3	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0010	1359	2	1	1	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0011	1359	1	0	1	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0012	1361	1	0	1	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRB3_chr8_37957990_37971599	0/0	t0013	1359	1	1	0	0	0	0	copy fasta	ADRB3	chr8	37957990	37971599
ADRM1_chr20_62297997_62313862	1/1	t0001	155	353	77	76	140	18	40	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	t0002	155	14	14	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADRM1_chr20_62297997_62313862	0/0	t0003	155	1	1	0	0	0	0	copy fasta	ADRM1	chr20	62297997	62313862
ADSL_chr22_40341500_40374367	1/0	t0001	2905	211	67	39	76	4	24	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/1	t0002	2906	65	4	10	43	2	5	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0003	2905	8	7	1	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0004	2906	3	3	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0005	2905	3	3	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0006	2906	2	0	2	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0007	2906	2	0	0	2	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0008	2905	1	1	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0009	2906	1	1	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0010	2906	1	1	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0011	2906	1	0	0	1	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0012	2905	1	0	1	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0013	2905	1	0	1	0	0	0	copy fasta	ADSL	chr22	40341500	40374367