JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DFFB_chr1_3852476_3890429	0/0	t0026	1817	1	0	1	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0027	1817	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0028	1817	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0029	1817	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0030	1817	1	0	0	1	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0031	1817	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0032	1817	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0033	1817	1	0	0	0	0	1	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0034	1817	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0035	1817	1	0	1	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0036	1817	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DFFB_chr1_3852476_3890429	0/0	t0037	1817	1	1	0	0	0	0	copy fasta	DFFB	chr1	3852476	3890429
DGAT1_chr8_144309584_144331852	0/1	t0001	2187	166	31	39	63	7	25	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0002	2187	120	4	21	75	5	15	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	1/0	t0003	2187	27	20	2	2	1	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0004	2187	7	2	1	0	1	3	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0005	2187	3	3	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0006	2187	3	2	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0007	2187	3	0	0	0	2	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0008	2187	3	3	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0009	2187	3	3	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0010	2187	2	2	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0011	2187	2	0	0	2	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0012	2187	2	0	0	2	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0013	2187	2	2	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0014	2187	2	2	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0015	2187	2	2	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0016	2187	2	0	2	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0017	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0018	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0019	2187	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0020	2187	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0021	2187	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0022	2187	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0023	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0024	2187	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0025	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0026	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0027	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0028	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0029	2187	1	1	0	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0030	2187	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0031	2187	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0032	2187	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0033	2187	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0034	2187	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0035	2187	1	0	1	0	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0036	2187	1	0	0	0	0	1	copy fasta	DGAT1	chr8	144309584	144331852
DGAT1_chr8_144309584_144331852	0/0	t0037	2187	1	0	0	1	0	0	copy fasta	DGAT1	chr8	144309584	144331852
DGAT2L6_chrX_70172483_70210704	1/1	t0001	699	207	38	41	89	11	26	copy fasta	DGAT2L6	chrX	70172483	70210704