JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGAT2L6_chrX_70172483_70210704	0/0	t0002	699	60	34	6	16	0	4	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2L6_chrX_70172483_70210704	0/0	t0003	697	5	5	0	0	0	0	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2L6_chrX_70172483_70210704	0/0	t0004	699	1	0	0	1	0	0	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2L6_chrX_70172483_70210704	0/0	t0005	699	1	1	0	0	0	0	copy fasta	DGAT2L6	chrX	70172483	70210704
DGAT2_chr11_75763778_75806534	1/1	t0001	1241	192	38	33	88	6	25	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0002	1241	111	37	11	55	1	7	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0003	1241	8	7	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0004	1241	2	0	1	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0005	1241	2	0	0	2	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0006	1241	1	1	0	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0007	1241	1	0	0	1	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0008	1241	1	1	0	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0009	1241	1	0	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0010	1241	1	0	0	0	1	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0011	1241	1	0	0	0	0	1	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0012	1241	1	1	0	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0013	1241	1	1	0	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGAT2_chr11_75763778_75806534	0/0	t0014	1241	1	0	1	0	0	0	copy fasta	DGAT2	chr11	75763778	75806534
DGCR2_chr22_19031286_19127412	1/0	t0001	2786	112	10	25	59	5	12	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0002	2800	35	1	7	20	1	6	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0003	2786	25	6	9	8	0	2	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0004	2787	20	1	3	11	0	5	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0005	2786	18	10	1	7	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0006	2800	11	11	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0007	2800	10	0	3	5	0	2	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0008	2800	10	0	0	8	0	2	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0009	2787	10	7	3	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0010	2786	8	8	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0011	2786	8	6	2	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0012	2800	7	0	5	2	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0013	2787	6	0	1	4	1	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0014	2786	4	0	0	4	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0015	2786	4	0	1	0	0	3	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0016	2786	4	3	1	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0017	2800	4	0	0	4	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0018	2800	4	0	2	1	0	1	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0019	2805	3	3	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0020	2800	3	3	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0021	2786	3	0	0	3	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0022	2786	2	2	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0023	2786	2	0	2	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0024	2786	2	2	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0025	2800	2	0	0	0	2	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0026	2800	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0027	2800	1	0	0	0	0	1	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0028	2800	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0029	2786	1	0	0	0	0	1	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0030	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0031	2787	1	0	1	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0032	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412