JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGCR2_chr22_19031286_19127412	0/0	t0033	2787	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0034	2786	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0035	2787	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0036	2786	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0037	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0038	2786	1	0	0	0	1	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0039	2787	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0040	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0041	2800	1	0	0	0	0	1	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/1	t0042	2800	1	0	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0043	2799	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0044	2817	1	0	1	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0045	2800	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0046	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0047	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0048	2787	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0049	2786	1	0	1	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0050	2786	1	1	0	0	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0051	2786	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR2_chr22_19031286_19127412	0/0	t0052	2786	1	0	0	1	0	0	copy fasta	DGCR2	chr22	19031286	19127412
DGCR6L_chr22_20309238_20325060	1/0	t0001	510	215	48	39	95	8	24	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/1	t0002	510	161	42	28	74	4	12	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	t0003	510	11	2	1	8	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6L_chr22_20309238_20325060	0/0	t0004	510	5	0	4	1	0	0	copy fasta	DGCR6L	chr22	20309238	20325060
DGCR6_chr22_18901320_18917088	0/1	t0001	455	329	74	69	133	14	38	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0002	455	44	0	11	29	1	3	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0003	455	13	1	2	5	1	4	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0004	455	10	10	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0005	453	6	1	0	5	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0006	455	4	4	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0007	455	3	0	0	0	0	3	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0008	455	2	2	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0009	455	1	1	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR6_chr22_18901320_18917088	0/0	t0010	455	1	1	0	0	0	0	copy fasta	DGCR6	chr22	18901320	18917088
DGCR8_chr22_20075241_20116872	0/0	t0001	2184	44	0	6	29	3	6	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	1/0	t0002	2185	37	13	6	11	2	4	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0003	2183	28	3	9	10	5	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0004	2186	28	6	0	17	0	5	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0005	2184	27	2	6	17	1	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0006	2184	25	7	8	7	1	2	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0007	2185	22	0	0	19	0	3	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0008	2185	19	4	3	8	0	4	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0009	2182	15	0	1	12	0	2	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0010	2184	11	0	2	9	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0011	2184	10	0	6	0	0	4	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0012	2183	8	0	0	8	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0013	2179	8	8	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0014	2181	7	7	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0015	2186	7	3	2	1	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0016	2186	6	1	0	5	0	0	copy fasta	DGCR8	chr22	20075241	20116872