JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGCR8_chr22_20075241_20116872	0/0	t0017	2186	6	2	1	2	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0018	2181	5	5	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0019	2182	5	1	0	2	2	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0020	2182	5	3	2	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0021	2185	5	0	0	3	1	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0022	2186	5	0	0	4	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0023	2181	4	0	0	4	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0024	2182	4	4	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0025	2183	4	1	1	1	1	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0026	2183	3	0	0	3	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0027	2185	3	3	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0028	2185	3	0	3	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0029	2183	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0030	2183	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0031	2185	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0032	2186	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0033	2183	2	0	0	1	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0034	2183	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0035	2184	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0036	2185	2	1	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0037	2184	2	0	0	0	1	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0038	2185	2	2	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0039	2185	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0040	2182	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0041	2182	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0042	2184	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0043	2182	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0044	2184	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0045	2181	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0046	2184	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0047	2181	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0048	2184	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0049	2185	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0050	2182	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0051	2184	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0052	2185	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0053	2186	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0054	2185	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0055	2184	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0056	2182	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0057	2183	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0058	2182	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0059	2183	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0060	2184	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0061	2185	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0062	2187	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0063	2185	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0064	2185	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0065	2185	1	0	0	0	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0066	2185	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872