JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGCR8_chr22_20075241_20116872	0/0	t0067	2183	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0068	2185	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0069	2178	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0070	2180	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0071	2182	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0072	2183	1	0	0	0	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0073	2184	1	0	0	1	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0074	2199	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0075	2198	1	0	0	0	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0076	2197	1	0	0	0	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0077	2196	1	0	0	0	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0078	2195	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0079	2194	1	0	0	0	1	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0080	2196	1	0	1	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0081	2195	1	0	0	0	0	1	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0082	2186	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGCR8_chr22_20075241_20116872	0/0	t0083	2186	1	1	0	0	0	0	copy fasta	DGCR8	chr22	20075241	20116872
DGKA_chr12_55926162_55959023	1/1	t0001	520	304	50	65	133	18	36	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	t0002	520	21	20	1	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	t0003	520	1	0	0	1	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	t0004	520	1	1	0	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKA_chr12_55926162_55959023	0/0	t0005	520	1	1	0	0	0	0	copy fasta	DGKA	chr12	55926162	55959023
DGKB_chr7_14140049_14907751	0/1	t0001	4431	38	10	7	15	2	3	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0002	4431	27	3	6	14	0	4	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0003	4430	18	16	2	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0004	4431	8	4	0	3	0	1	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0005	4430	6	5	1	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0006	4430	3	0	0	3	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0007	4431	3	0	1	2	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0008	4433	3	3	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0009	4432	3	3	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	1/0	t0010	4430	3	1	0	0	1	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0011	4430	2	2	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0012	4431	2	0	0	0	1	1	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0013	4430	2	2	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0014	4431	2	0	2	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0015	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0016	4431	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0017	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0018	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0019	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0020	4431	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0021	4431	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0022	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0023	4431	1	0	0	0	0	1	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0024	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0025	4431	1	0	1	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0026	4431	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0027	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0028	4431	1	0	0	1	0	0	copy fasta	DGKB	chr7	14140049	14907751