JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKB_chr7_14140049_14907751	0/0	t0029	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0030	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0031	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0032	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0033	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0034	4434	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0035	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0036	4433	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0037	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0038	4431	1	0	1	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0039	4430	1	0	1	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0040	4430	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0041	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKB_chr7_14140049_14907751	0/0	t0042	4431	1	1	0	0	0	0	copy fasta	DGKB	chr7	14140049	14907751
DGKD_chr2_233349494_233477098	1/1	t0001	2664	69	6	20	35	3	3	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0002	2664	67	12	12	37	3	3	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0003	2664	57	9	11	22	3	12	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0004	2664	22	9	4	3	0	6	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0005	2678	16	6	4	3	2	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0006	2678	12	12	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0007	2678	12	6	0	6	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0008	2664	8	0	0	7	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0009	2664	7	0	0	7	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0010	2613	5	5	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0011	2613	5	0	4	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0012	2662	4	0	0	4	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0013	2678	4	4	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0014	2678	3	3	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0015	2664	2	2	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0016	2664	2	0	2	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0017	2613	2	0	1	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0018	2664	2	0	2	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0019	2664	2	0	0	2	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0020	2678	2	0	1	0	1	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0021	2678	2	2	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0022	2678	2	2	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0023	2678	2	2	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0024	2678	2	2	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0025	2664	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0026	2664	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0027	2664	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0028	2664	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0029	2664	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0030	2664	1	0	0	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0031	2664	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0032	2664	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0033	2664	1	0	0	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0034	2664	1	0	0	0	1	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0035	2678	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0036	2678	1	0	0	0	1	0	copy fasta	DGKD	chr2	233349494	233477098