JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKD_chr2_233349494_233477098	0/0	t0037	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0038	2678	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0039	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0040	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0041	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0042	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0043	2678	1	0	1	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0044	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0045	2678	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0046	2678	1	0	0	1	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0047	2664	1	0	0	0	0	1	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0048	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKD_chr2_233349494_233477098	0/0	t0049	2678	1	1	0	0	0	0	copy fasta	DGKD	chr2	233349494	233477098
DGKE_chr17_56829151_56874567	0/1	t0001	6915	103	12	21	53	3	13	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0002	6905	39	10	10	8	3	8	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0003	6916	25	7	8	2	2	6	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0004	6905	24	0	0	16	0	8	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0005	6904	14	10	1	0	1	2	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0006	6905	12	12	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0007	6925	11	10	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0008	6915	8	0	0	8	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0009	6918	8	0	8	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0010	6915	7	1	4	0	2	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0011	6915	6	6	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0012	6915	5	0	4	0	0	1	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0013	6916	4	0	0	4	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0014	6916	3	0	1	2	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0015	6908	3	3	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0016	6904	2	0	2	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0017	6905	2	0	0	2	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0018	6905	2	2	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0019	6904	2	0	0	0	1	1	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0020	6905	2	2	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0021	6915	2	0	0	2	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0022	6915	2	0	0	2	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0023	6916	2	0	0	1	0	1	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0024	6915	2	0	0	0	0	2	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0025	6917	2	2	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0026	6905	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0027	6904	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0028	6906	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	1/0	t0029	6905	1	0	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0030	6905	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0031	6904	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0032	6905	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0033	6905	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0034	6905	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0035	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0036	6915	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0037	6915	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567