JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKE_chr17_56829151_56874567	0/0	t0038	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0039	6917	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0040	6908	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0041	6926	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0042	6915	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0043	6915	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0044	6915	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0045	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0046	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0047	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0048	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0049	6915	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0050	6916	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0051	6915	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0052	6915	1	0	0	1	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0053	6916	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0054	6918	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0055	6917	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0056	6917	1	1	0	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKE_chr17_56829151_56874567	0/0	t0057	6915	1	0	1	0	0	0	copy fasta	DGKE	chr17	56829151	56874567
DGKG_chr3_186142201_186367234	0/0	t0001	3429	35	0	10	19	1	5	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0002	3427	31	0	10	12	1	8	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0003	3427	24	18	6	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0004	3429	19	2	6	4	3	4	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	1/0	t0005	3427	17	6	5	0	1	4	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0006	3427	14	1	5	1	0	7	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0007	3427	9	8	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0008	3426	9	8	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0009	3427	8	4	1	2	0	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/1	t0010	3429	7	0	2	3	0	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0011	3427	6	6	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0012	3427	4	3	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0013	3429	4	0	0	4	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0014	3429	4	1	2	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0015	3427	3	3	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0016	3427	3	3	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0017	3427	2	0	0	2	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0018	3426	2	0	0	0	1	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0019	3426	2	2	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0020	3427	2	0	0	0	0	2	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0021	3429	2	2	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0022	3427	2	1	0	0	1	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0023	3427	2	2	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0024	3427	1	0	0	0	0	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0025	3427	1	0	0	0	0	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0026	3425	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0027	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0028	3427	1	0	0	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0029	3429	1	0	0	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0030	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234