JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKG_chr3_186142201_186367234	0/0	t0031	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0032	3429	1	0	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0033	3429	1	0	1	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0034	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0035	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0036	3427	1	0	0	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0037	3429	1	0	0	1	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0038	3426	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0039	3426	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0040	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0041	3429	1	0	0	0	0	1	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0042	3425	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0043	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0044	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0045	3427	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKG_chr3_186142201_186367234	0/0	t0046	3429	1	1	0	0	0	0	copy fasta	DGKG	chr3	186142201	186367234
DGKH_chr13_42043648_42247896	0/0	t0001	13838	51	7	7	31	2	4	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0002	13833	16	0	7	4	1	4	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0003	13840	14	1	3	10	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0004	13839	10	1	1	5	1	2	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0005	13840	10	0	0	10	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0006	13840	10	0	0	10	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0007	13838	8	0	0	7	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0008	13838	7	4	0	2	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0009	13837	7	6	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0010	13839	6	0	5	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0011	13840	5	0	0	0	0	5	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0012	13839	5	0	3	2	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0013	13839	5	4	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0014	13839	4	0	0	3	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0015	13839	4	4	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0016	13840	4	0	3	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/1	t0017	13838	4	1	2	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0018	13840	4	4	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0019	13839	3	0	0	3	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0020	13839	3	3	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0021	13838	3	0	0	3	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0022	13839	3	0	0	2	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0023	13839	3	0	1	0	0	2	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0024	13840	3	3	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0025	13838	3	0	1	0	0	2	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0026	13835	3	2	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0027	13838	2	0	2	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0028	13840	2	0	0	2	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0029	13834	2	0	2	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0030	13834	2	2	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0031	13835	2	0	2	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0032	13834	2	0	0	2	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0033	13834	2	0	0	2	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0034	13834	2	0	0	2	0	0	copy fasta	DGKH	chr13	42043648	42247896