Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ADSL_chr22_40341500_40374367	0/0	t0014	2905	1	0	0	0	0	1	copy fasta	ADSL	chr22	40341500	40374367
ADSL_chr22_40341500_40374367	0/0	t0015	2905	1	1	0	0	0	0	copy fasta	ADSL	chr22	40341500	40374367
ADSS1_chr14_104719229_104752310	0/0	t0001	350	255	80	55	97	3	20	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	1/1	t0002	350	137	7	20	78	13	17	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0003	350	4	4	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0004	350	1	1	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0005	350	1	0	0	1	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0006	350	1	0	1	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0007	350	1	0	0	0	0	1	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0008	350	1	1	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS1_chr14_104719229_104752310	0/0	t0009	350	1	1	0	0	0	0	copy fasta	ADSS1	chr14	104719229	104752310
ADSS2_chr1_244403494_244456909	0/1	t0001	1186	181	47	39	66	7	21	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0002	1186	82	23	19	33	2	5	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0003	1186	71	3	10	47	2	9	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	1/0	t0004	1185	68	21	10	31	0	5	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0005	1186	1	0	0	1	0	0	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0006	1185	1	0	0	1	0	0	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0007	1185	1	0	0	1	0	0	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0008	1186	1	0	0	1	0	0	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0009	1186	1	0	0	0	1	0	copy fasta	ADSS2	chr1	244403494	244456909
ADSS2_chr1_244403494_244456909	0/0	t0010	1185	1	0	0	1	0	0	copy fasta	ADSS2	chr1	244403494	244456909
ADTRP_chr6_11708523_11783803	0/0	t0001	1000	152	19	45	62	5	21	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/1	t0002	1001	125	46	16	50	1	11	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0003	999	75	8	2	60	1	4	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	1/0	t0004	1000	30	6	9	0	4	10	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0005	1001	10	1	4	5	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0006	1002	8	4	1	0	1	2	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0007	997	3	3	0	0	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0008	1001	3	1	2	0	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0009	998	1	0	0	1	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0010	999	1	0	1	0	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0011	999	1	0	0	1	0	0	copy fasta	ADTRP	chr6	11708523	11783803
ADTRP_chr6_11708523_11783803	0/0	t0012	1000	1	0	0	1	0	0	copy fasta	ADTRP	chr6	11708523	11783803
AEBP1_chr7_44099345_44119560	1/0	t0001	621	353	90	53	157	12	40	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/1	t0002	621	67	1	17	37	6	5	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	t0003	621	2	2	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	t0004	621	1	1	0	0	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	t0005	621	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	t0006	621	1	0	0	0	0	1	copy fasta	AEBP1	chr7	44099345	44119560
AEBP1_chr7_44099345_44119560	0/0	t0007	621	1	0	0	1	0	0	copy fasta	AEBP1	chr7	44099345	44119560
AEBP2_chr12_19434492_19527227	0/0	t0001	4322	78	33	8	35	0	2	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	1/0	t0002	4319	71	2	20	39	1	8	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/1	t0003	4317	52	1	12	30	4	4	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0004	4316	41	10	3	21	0	7	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0005	4319	28	7	11	9	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0006	4321	20	3	5	1	1	10	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0007	4317	14	11	0	1	1	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0008	4316	10	0	3	4	1	2	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0009	4318	8	0	4	4	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0010	4321	8	1	0	7	0	0	copy fasta	AEBP2	chr12	19434492	19527227