JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	SAS	tseq	genename	chr	start	end
DGKH_chr13_42043648_42247896	0/0	t0085	13839	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0086	13838	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0087	13839	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0088	13840	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0089	13839	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0090	13840	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0091	13840	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0092	13839	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0093	13838	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0094	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0095	13838	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0096	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0097	13838	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0098	13839	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0099	13840	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0100	13839	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0101	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0102	13840	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0103	13840	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0104	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0105	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0106	13840	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0107	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0108	13839	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0109	13839	1	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0110	13840	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0111	13839	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0112	13838	1	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0113	13838	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0114	13839	1	0	1	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0115	13838	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0116	13836	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0117	13837	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0118	13837	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	1/0	t0119	13835	1	0	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0120	13835	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0121	13835	1	1	0	0	0	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0122	13836	1	0	0	0	1	copy fasta	DGKH	chr13	42043648	42247896
DGKH_chr13_42043648_42247896	0/0	t0123	13838	1	0	0	1	0	copy fasta	DGKH	chr13	42043648	42247896
DGKI_chr7_137376037_137851974	0/0	t0001	10299	7	6	1	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/1	t0002	10300	7	3	1	0	2	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0003	10300	6	6	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0004	10301	5	2	1	0	2	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0005	10299	5	5	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0006	10299	4	2	2	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0007	10297	4	4	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0008	10298	3	3	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0009	10300	3	3	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0010	10300	3	3	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0011	10302	3	3	0	0	0	copy fasta	DGKI	chr7	137376037	137851974