JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKI_chr7_137376037_137851974	0/0	t0012	10299	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0013	10299	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0014	10300	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0015	10298	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0016	10300	2	2	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0017	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0018	10298	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	1/0	t0019	10296	1	0	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0020	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0021	10300	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0022	10299	1	0	1	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0023	10297	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0024	10299	1	0	0	1	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0025	10301	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0026	10301	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0027	10300	1	0	0	1	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0028	10302	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0029	10300	1	0	1	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0030	10299	1	0	0	0	0	1	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0031	10302	1	0	0	1	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0032	10300	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0033	10301	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0034	10300	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0035	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0036	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0037	10300	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0038	10307	1	0	1	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0039	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0040	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0041	10298	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0042	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0043	10297	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0044	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0045	10296	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0046	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0047	10301	1	0	0	1	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0048	10300	1	0	0	0	0	1	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0049	10300	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKI_chr7_137376037_137851974	0/0	t0050	10299	1	1	0	0	0	0	copy fasta	DGKI	chr7	137376037	137851974
DGKK_chrX_50360409_50475825	1/1	t0001	3679	188	14	46	98	7	21	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0002	3679	36	32	4	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0003	3679	8	6	2	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0004	3679	5	5	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0005	3679	4	4	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0006	3679	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0007	3679	1	0	0	0	0	1	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0008	3679	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0009	3683	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0010	3679	1	0	0	1	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKK_chrX_50360409_50475825	0/0	t0011	3679	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825