JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKK_chrX_50360409_50475825	0/0	t0012	3679	1	1	0	0	0	0	copy fasta	DGKK	chrX	50360409	50475825
DGKQ_chr4_953887_978569	0/1	t0001	1821	135	12	36	70	4	12	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	1/0	t0002	1821	60	1	20	33	5	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0003	1822	51	5	3	24	3	16	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0004	1822	45	2	6	28	2	7	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0005	1821	19	0	1	17	0	1	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0006	1822	15	13	2	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0007	1821	11	11	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0008	1821	11	11	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0009	1821	11	3	0	7	1	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0010	1821	7	0	0	7	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0011	1821	7	6	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0012	1821	6	6	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0013	1821	5	5	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0014	1821	5	0	0	1	0	4	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0015	1822	4	4	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0016	1821	3	3	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0017	1821	3	3	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0018	1821	3	3	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0019	1821	3	1	2	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0020	1821	2	0	0	2	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0021	1821	2	0	0	2	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0022	1821	2	0	2	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0023	1822	2	0	1	0	0	1	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0024	1821	2	1	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0025	1821	2	0	0	2	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0026	1822	2	0	0	2	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0027	1821	2	1	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0028	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0029	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0030	1822	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0031	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0032	1821	1	1	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0033	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0034	1821	1	1	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0035	1821	1	0	0	0	0	1	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0036	1821	1	1	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0037	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0038	1822	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0039	1822	1	0	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0040	1821	1	1	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0041	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0042	1822	1	0	1	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0043	1821	1	0	0	1	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0044	1821	1	1	0	0	0	0	copy fasta	DGKQ	chr4	953887	978569
DGKQ_chr4_953887_978569	0/0	t0045	1821	1	0	0	0	1	0	copy fasta	DGKQ	chr4	953887	978569
DGKZ_chr11_46342463_46385551	1/1	t0001	802	264	92	57	70	8	35	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	t0002	802	2	1	1	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	t0003	802	1	0	0	1	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	t0004	802	1	1	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551