JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DGKZ_chr11_46342463_46385551	0/0	t0005	802	1	0	0	1	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	t0006	802	1	0	0	0	0	1	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	t0007	802	1	1	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGKZ_chr11_46342463_46385551	0/0	t0008	802	1	1	0	0	0	0	copy fasta	DGKZ	chr11	46342463	46385551
DGLUCY_chr14_91109073_91230632	0/0	t0001	1092	167	77	38	30	5	17	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	1/0	t0002	1092	14	5	1	5	0	2	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/1	t0003	1092	13	0	10	0	1	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0004	1092	4	4	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0005	1092	3	3	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0006	1092	3	0	1	1	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0007	1092	2	1	0	0	0	1	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0008	1092	2	0	0	2	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0009	1092	2	0	2	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0010	1092	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0011	1092	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0012	1092	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0013	1092	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0014	1092	1	1	0	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGLUCY_chr14_91109073_91230632	0/0	t0015	1092	1	0	1	0	0	0	copy fasta	DGLUCY	chr14	91109073	91230632
DGUOK_chr2_73921880_73963946	0/1	t0001	242	178	39	35	74	6	23	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	1/0	t0002	242	172	55	21	72	6	17	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	t0003	242	1	0	0	1	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DGUOK_chr2_73921880_73963946	0/0	t0004	242	1	0	0	1	0	0	copy fasta	DGUOK	chr2	73921880	73963946
DHCR24_chr1_54844627_54892195	0/1	t0001	2683	169	26	33	70	9	30	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0002	2683	101	10	18	64	5	4	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0003	2683	29	20	1	8	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0004	2683	18	1	13	0	2	2	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0005	2683	15	15	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0006	2683	11	0	0	11	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0007	2683	9	0	0	9	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0008	2683	6	4	2	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0009	2683	3	3	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0010	2683	3	3	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0011	2683	3	0	0	3	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0012	2683	2	0	0	1	0	1	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0013	2683	2	0	2	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0014	2683	2	2	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0015	2683	2	0	0	2	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0016	2683	2	0	0	2	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0017	2683	2	0	0	2	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0018	2683	1	0	0	1	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0019	2683	1	0	0	0	0	1	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0020	2733	1	0	0	1	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	1/0	t0021	2683	1	0	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0022	2683	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0023	2683	1	1	0	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR24_chr1_54844627_54892195	0/0	t0024	2683	1	0	1	0	0	0	copy fasta	DHCR24	chr1	54844627	54892195
DHCR7_chr11_71429411_71453393	0/0	t0001	1188	124	27	11	69	5	12	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/1	t0002	1200	111	9	31	55	9	6	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	1/0	t0003	1200	89	14	17	32	1	24	copy fasta	DHCR7	chr11	71429411	71453393