JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHCR7_chr11_71429411_71453393	0/0	t0004	1200	19	0	2	17	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0005	1200	19	11	2	6	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0006	1188	9	0	2	2	1	4	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0007	1200	8	8	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0008	1200	6	6	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0009	1200	5	5	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0010	1200	3	3	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0011	1200	3	3	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0012	1200	2	0	0	2	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0013	1200	2	0	2	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0014	1200	2	2	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0015	1188	1	0	0	0	0	1	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0016	1200	1	1	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0017	1200	1	0	0	1	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0018	1200	1	0	1	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0019	1200	1	1	0	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0020	1200	1	0	1	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0021	1200	1	0	0	0	0	1	copy fasta	DHCR7	chr11	71429411	71453393
DHCR7_chr11_71429411_71453393	0/0	t0022	1200	1	0	1	0	0	0	copy fasta	DHCR7	chr11	71429411	71453393
DHDDS_chr1_26427321_26476306	0/0	t0001	2289	97	25	19	42	1	10	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0002	2287	72	11	24	24	2	11	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0003	2287	65	23	11	18	5	8	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0004	2287	22	8	10	0	4	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0005	2287	18	5	4	5	1	3	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0006	2288	7	0	2	1	3	1	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0007	2288	5	1	2	1	0	1	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0008	2289	5	5	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0009	2290	4	4	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0010	2290	3	1	0	2	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0011	2289	2	2	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0012	2289	2	2	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0013	2289	1	0	0	1	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0014	2287	1	0	0	1	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0015	2287	1	0	0	0	0	1	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0016	2288	1	1	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0017	2289	1	0	0	1	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0018	2289	1	0	1	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0019	2289	1	0	0	1	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0020	2287	1	0	1	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0021	2287	1	1	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0022	2287	1	0	0	0	0	1	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0023	2289	1	0	0	1	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDDS_chr1_26427321_26476306	0/0	t0024	2289	1	1	0	0	0	0	copy fasta	DHDDS	chr1	26427321	26476306
DHDH_chr19_48928699_48949969	1/1	t0001	60	436	98	76	198	16	46	copy fasta	DHDH	chr19	48928699	48949969
DHFR2_chr3_94052922_94067916	1/0	t0001	3293	259	43	45	131	9	30	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/1	t0002	3292	50	2	9	30	2	6	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0003	3292	11	0	9	0	1	1	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0004	3293	10	10	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0005	3294	9	7	1	1	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0006	3294	7	2	1	2	0	2	copy fasta	DHFR2	chr3	94052922	94067916