JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHFR2_chr3_94052922_94067916	0/0	t0007	3292	6	5	1	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0008	3287	4	0	2	0	2	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0009	3293	4	4	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0010	3293	4	3	1	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0011	3294	3	3	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0012	3294	2	2	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0013	3293	2	1	1	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0014	3293	2	2	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0015	3293	2	0	0	0	1	1	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0016	3293	2	0	0	2	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0017	3293	2	2	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0018	3293	2	0	0	2	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0019	3293	2	0	0	2	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0020	3294	1	1	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0021	3293	1	0	1	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0022	3293	1	0	0	0	1	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0023	3292	1	0	1	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0024	3292	1	1	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0025	3292	1	0	0	0	0	1	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0026	3293	1	0	0	0	0	1	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0027	3293	1	1	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0028	3293	1	1	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0029	3292	1	1	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR2_chr3_94052922_94067916	0/0	t0030	3294	1	1	0	0	0	0	copy fasta	DHFR2	chr3	94052922	94067916
DHFR_chr5_80621226_80659983	0/0	t0001	3356	117	6	22	76	3	10	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0002	3364	43	0	9	29	1	4	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0003	3325	35	18	4	3	4	6	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0004	3357	26	4	10	9	1	2	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0005	3356	19	0	3	7	3	6	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0006	3325	18	4	9	0	2	3	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0007	3358	14	13	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0008	3323	8	0	2	6	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0009	3338	5	0	0	5	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0010	3355	5	5	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0011	3364	5	5	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0012	3346	4	4	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0013	3347	4	0	0	4	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0014	3365	4	0	0	3	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0015	3364	4	0	0	4	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0016	3356	3	2	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0017	3376	3	3	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0018	3385	3	2	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0019	3347	2	0	0	0	1	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0020	3356	2	0	1	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0021	3358	2	1	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0022	3356	2	0	0	0	1	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0023	3357	2	2	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0024	3356	2	2	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0025	3355	2	0	0	2	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0026	3383	2	2	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983