JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHFR_chr5_80621226_80659983	0/0	t0027	3357	2	1	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0028	3356	2	0	2	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0029	3364	2	0	2	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0030	3373	2	0	1	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0031	3373	2	0	0	2	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0032	3349	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0033	3348	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0034	3355	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0035	3357	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0036	3356	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0037	3355	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0038	3357	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0039	3356	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0040	3355	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0041	3357	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0042	3356	1	0	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0043	3358	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0044	3374	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0045	3376	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0046	3374	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0047	3385	1	0	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0048	3325	1	0	0	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0049	3330	1	0	0	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0050	3325	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0051	3352	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0052	3350	1	0	0	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0053	3355	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0054	3355	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0055	3365	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0056	3364	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0057	3365	1	1	0	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0058	3362	1	0	0	0	0	1	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0059	3364	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0060	3373	1	0	0	1	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHFR_chr5_80621226_80659983	0/0	t0061	3373	1	0	1	0	0	0	copy fasta	DHFR	chr5	80621226	80659983
DHH_chr12_49081656_49099801	1/1	t0001	3493	173	18	28	100	9	16	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0002	3493	148	15	27	82	6	18	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0003	3492	16	8	4	1	0	3	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0004	3492	12	10	2	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0005	3492	11	4	1	5	1	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0006	3493	5	4	0	0	0	1	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0007	3494	4	4	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0008	3493	4	4	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0009	3493	4	4	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0010	3493	3	3	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0011	3493	3	0	0	3	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0012	3492	3	3	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0013	3493	2	2	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0014	3493	2	0	0	0	2	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0015	3492	2	0	0	1	0	1	copy fasta	DHH	chr12	49081656	49099801