JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHH_chr12_49081656_49099801	0/0	t0016	3493	2	0	0	2	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0017	3493	2	0	0	2	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0018	3493	2	2	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0019	3492	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0020	3492	1	0	0	0	0	1	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0021	3493	1	0	0	0	0	1	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0022	3493	1	0	1	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0023	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0024	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0025	3493	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0026	3493	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0027	3493	1	0	1	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0028	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0029	3494	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0030	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0031	3494	1	0	0	0	0	1	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0032	3527	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0033	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0034	3493	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0035	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0036	3493	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0037	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0038	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0039	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0040	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0041	3492	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0042	3493	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0043	3492	1	1	0	0	0	0	copy fasta	DHH	chr12	49081656	49099801
DHH_chr12_49081656_49099801	0/0	t0044	3493	1	0	0	1	0	0	copy fasta	DHH	chr12	49081656	49099801
DHODH_chr16_72003744_72032659	0/1	t0001	3468	79	2	6	56	4	10	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0002	3480	36	6	14	15	1	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0003	3472	32	27	3	0	0	2	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0004	3482	29	1	3	24	1	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0005	3480	24	0	6	15	0	3	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0006	3478	16	0	12	3	1	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0007	3473	15	1	3	3	3	5	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0008	3480	15	1	2	8	1	3	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0009	3464	15	0	2	8	4	1	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0010	3474	13	13	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0011	3482	9	0	1	5	0	3	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0012	3480	7	7	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	1/0	t0013	3482	6	0	2	1	0	2	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0014	3482	6	1	0	5	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0015	3475	5	0	1	1	0	3	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0016	3468	5	4	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0017	3481	5	0	3	2	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0018	3480	4	4	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0019	3484	4	0	3	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0020	3478	4	0	2	2	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0021	3473	4	0	2	0	0	2	copy fasta	DHODH	chr16	72003744	72032659