JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHODH_chr16_72003744_72032659	0/0	t0072	3472	1	0	1	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0073	3474	1	1	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0074	3474	1	1	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0075	3475	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0076	3480	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0077	3478	1	1	0	0	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0078	3468	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0079	3468	1	0	0	0	0	1	copy fasta	DHODH	chr16	72003744	72032659
DHODH_chr16_72003744_72032659	0/0	t0080	3482	1	0	0	1	0	0	copy fasta	DHODH	chr16	72003744	72032659
DHPS_chr19_12670717_12686880	1/1	t0001	236	375	75	69	164	15	50	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	t0002	236	20	19	1	0	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	t0003	236	3	0	0	3	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	t0004	236	1	0	0	1	0	0	copy fasta	DHPS	chr19	12670717	12686880
DHPS_chr19_12670717_12686880	0/0	t0005	236	1	0	0	0	1	0	copy fasta	DHPS	chr19	12670717	12686880
DHRS11_chr17_36586879_36605804	0/1	t0001	733	379	86	71	166	9	46	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	t0002	733	2	0	0	2	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	t0003	733	1	0	0	1	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	t0004	733	1	0	0	0	1	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	t0005	733	1	0	0	1	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS11_chr17_36586879_36605804	0/0	t0006	733	1	0	1	0	0	0	copy fasta	DHRS11	chr17	36586879	36605804
DHRS12_chr13_51762993_51809163	1/1	t0001	313	281	58	47	133	11	30	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0002	313	64	1	9	38	5	11	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0003	310	60	23	24	10	0	3	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0004	312	9	9	0	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0005	310	3	0	0	3	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0006	309	1	1	0	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0007	313	1	1	0	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS12_chr13_51762993_51809163	0/0	t0008	313	1	1	0	0	0	0	copy fasta	DHRS12	chr13	51762993	51809163
DHRS13_chr17_28892781_28908079	1/0	t0001	796	316	77	63	130	12	33	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/1	t0002	796	65	11	14	26	1	12	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0003	796	18	0	0	18	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0004	796	3	2	0	1	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0005	796	2	1	1	0	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0006	796	2	2	0	0	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0007	796	1	0	0	1	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0008	796	1	0	0	0	1	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0009	796	1	0	0	1	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0010	796	1	0	0	0	0	1	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0011	796	1	1	0	0	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS13_chr17_28892781_28908079	0/0	t0012	796	1	0	0	1	0	0	copy fasta	DHRS13	chr17	28892781	28908079
DHRS1_chr14_24285598_24304780	0/1	t0001	486	216	34	23	129	6	23	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	1/0	t0002	486	106	39	26	30	4	6	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	t0003	485	80	10	19	33	4	14	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	t0004	486	4	4	0	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	t0005	485	3	1	0	2	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	t0006	485	3	0	0	0	2	1	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	t0007	485	1	0	1	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS1_chr14_24285598_24304780	0/0	t0008	486	1	0	1	0	0	0	copy fasta	DHRS1	chr14	24285598	24304780
DHRS2_chr14_23631364_23650639	1/1	t0001	834	260	37	52	111	17	41	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0002	834	124	9	26	81	1	7	copy fasta	DHRS2	chr14	23631364	23650639