Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
A1CF_chr10_50794409_50890627	0/0	t0030	7462	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0031	7462	1	0	0	0	1	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0032	7462	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0033	7461	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0034	7461	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0035	7462	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0036	7462	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0037	7462	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0038	7461	1	0	0	0	0	1	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0039	7462	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0040	7462	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0041	7462	1	0	1	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	1/0	t0042	7461	1	0	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0043	7461	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0044	7462	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0045	7462	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0046	7455	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0047	7454	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0048	7454	1	1	0	0	0	0	copy fasta	A1CF	chr10	50794409	50890627
A1CF_chr10_50794409_50890627	0/0	t0049	7461	1	0	0	1	0	0	copy fasta	A1CF	chr10	50794409	50890627
A2ML1_chr12_8817621_8881787	0/1	t0001	761	138	24	25	67	3	18	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	1/0	t0002	762	120	22	19	66	4	8	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	t0003	761	65	14	16	21	3	11	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	t0004	761	23	16	5	0	0	2	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	t0005	761	9	6	3	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	t0006	761	7	2	4	0	0	1	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	t0007	762	4	4	0	0	0	0	copy fasta	A2ML1	chr12	8817621	8881787
A2ML1_chr12_8817621_8881787	0/0	t0008	761	2	0	0	0	2	0	copy fasta	A2ML1	chr12	8817621	8881787
A2M_chr12_9062708_9120919	1/1	t0001	186	187	20	34	101	6	24	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	t0002	186	144	61	32	27	4	20	copy fasta	A2M	chr12	9062708	9120919
A2M_chr12_9062708_9120919	0/0	t0003	186	1	1	0	0	0	0	copy fasta	A2M	chr12	9062708	9120919
A4GALT_chr22_42687121_42725870	0/1	t0001	1031	108	45	19	22	9	12	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0002	1032	104	0	10	88	0	6	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0003	1007	48	3	11	24	1	9	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	1/0	t0004	1031	36	18	8	2	3	4	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0005	1032	32	0	14	13	3	2	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0006	1032	17	0	0	17	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0007	1007	12	0	4	8	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0008	1006	6	1	2	0	1	2	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0009	1031	6	1	4	0	0	1	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0010	1032	6	6	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0011	1031	5	5	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0012	1006	3	0	3	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0013	1032	3	2	1	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0014	1006	2	0	1	0	1	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0015	1007	2	0	0	2	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0016	1007	2	0	0	0	0	2	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0017	1031	2	2	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0018	1031	2	2	0	0	0	0	copy fasta	A4GALT	chr22	42687121	42725870
A4GALT_chr22_42687121_42725870	0/0	t0019	1033	2	0	0	2	0	0	copy fasta	A4GALT	chr22	42687121	42725870