Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
ABCB5_chr7_20610667_20762008	0/0	t0015	1577	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0016	1577	1	0	0	0	1	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0017	1577	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0018	1577	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0019	1577	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0020	1577	1	0	0	0	1	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0021	1577	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0022	1577	1	1	0	0	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0023	1577	1	0	0	1	0	0	copy fasta	ABCB5	chr7	20610667	20762008
ABCB5_chr7_20610667_20762008	0/0	t0024	1577	1	0	0	0	0	1	copy fasta	ABCB5	chr7	20610667	20762008
ABCB6_chr2_219204772_219223958	0/1	t0001	452	244	27	66	102	16	32	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	t0002	452	99	51	9	31	0	8	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	1/0	t0003	452	9	7	1	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	t0004	452	2	2	0	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	t0005	452	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	t0006	452	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	t0007	452	1	0	0	1	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB6_chr2_219204772_219223958	0/0	t0008	452	1	1	0	0	0	0	copy fasta	ABCB6	chr2	219204772	219223958
ABCB7_chrX_75046048_75161283	0/0	t0001	2340	96	11	12	62	2	9	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	1/1	t0002	2334	49	4	21	5	5	12	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0003	2344	17	15	2	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0004	2335	15	8	1	0	0	6	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0005	2341	6	1	1	4	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0006	2341	5	5	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0007	2340	5	5	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0008	2335	5	3	2	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0009	2339	4	1	1	2	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0010	2339	4	4	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0011	2341	4	0	0	2	0	2	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0012	2342	3	3	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0013	2336	3	2	0	1	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0014	2340	2	2	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0015	2341	2	0	0	2	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0016	2340	2	1	1	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0017	2329	2	2	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0018	2341	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0019	2340	1	0	0	1	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0020	2340	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0021	2340	1	0	1	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0022	2335	1	0	1	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0023	2336	1	0	0	0	0	1	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0024	2337	1	1	0	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB7_chrX_75046048_75161283	0/0	t0025	2336	1	0	1	0	0	0	copy fasta	ABCB7	chrX	75046048	75161283
ABCB8_chr7_151023450_151052782	0/0	t0001	2500	107	10	24	52	3	18	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0002	2500	99	15	16	57	2	9	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/1	t0003	2497	89	15	12	44	6	11	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0004	2500	41	25	3	9	2	2	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0005	2500	13	3	3	4	2	1	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0006	2500	8	1	7	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782
ABCB8_chr7_151023450_151052782	0/0	t0007	2499	7	6	1	0	0	0	copy fasta	ABCB8	chr7	151023450	151052782