Joint Open Genome and Omics Platform (JoGo)

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
AEBP2_chr12_19434492_19527227	0/0	t0011	4315	7	1	0	5	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0012	4318	6	0	1	5	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0013	4319	5	5	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0014	4320	5	0	4	0	1	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0015	4318	4	4	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0016	4320	4	0	0	4	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0017	4318	3	3	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0018	4319	3	3	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0019	4320	3	0	0	3	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0020	4323	3	3	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0021	4316	2	0	0	2	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0022	4318	2	1	1	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0023	4323	2	0	0	1	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0024	4315	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0025	4317	1	0	1	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0026	4323	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0027	4317	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0028	4317	1	0	0	0	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0029	4317	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0030	4317	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0031	4317	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0032	4318	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0033	4319	1	0	1	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0034	4319	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0035	4319	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0036	4320	1	0	0	0	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0037	4319	1	0	0	0	1	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0038	4321	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0039	4321	1	0	0	0	0	1	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0040	4322	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0041	4322	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0042	4322	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0043	4322	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0044	4322	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0045	4322	1	1	0	0	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0046	4323	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0047	4322	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEBP2_chr12_19434492_19527227	0/0	t0048	4317	1	0	0	1	0	0	copy fasta	AEBP2	chr12	19434492	19527227
AEN_chr15_88616340_88637281	0/1	t0001	2095	226	16	42	134	10	23	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0002	2095	40	1	9	27	0	3	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0003	2095	33	15	1	15	0	2	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0004	2095	14	9	3	2	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0005	2095	14	1	8	0	2	3	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0006	2095	12	9	1	0	1	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0007	2095	10	6	3	0	1	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0008	2095	8	7	1	0	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0009	2095	5	0	0	4	0	1	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	1/0	t0010	2095	5	0	2	2	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0011	2094	5	0	0	5	0	0	copy fasta	AEN	chr15	88616340	88637281
AEN_chr15_88616340_88637281	0/0	t0012	2095	5	3	2	0	0	0	copy fasta	AEN	chr15	88616340	88637281