JoGo: Joint Open Genome and Omics Platform

Search Genic Haplotype Catalog

Haplotypefield

Choose the ACTG layer used to define haplotypes.

Genename

e.g. ALDH2, HBB.

Chr

Chromosome number (1-22, X, Y).

GRCh38

1 = haplotype type matches GRCh38; 0 = does not match.

Chm13v2

1 = haplotype type matches CHM13v2; 0 = does not match.

Gpopname

Filter by superpopulation group.

Popname

Filter by population group.

Total

Minimum number of hits (≥).

Start

Start coordinate (GRCh38).

End

End coordinate (GRCh38).

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regionname	grch38/ chm13v2 1/0: The haplotype type is the same as GRCh38 0/1: The haplotype type is the same as CHM13v2 0/0: The haplotype type matches neither GRCh38 nor CHM13v2 1/1: The haplotype type is the same on both GRCh38 and CHM13v2	thapid	tlen	total	AFR	AMR	EAS	EUR	SAS	tseq	genename	chr	start	end
DHRS2_chr14_23631364_23650639	0/0	t0003	834	27	27	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0004	834	6	6	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0005	834	5	4	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0006	834	4	4	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0007	834	2	0	0	0	0	2	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0008	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0009	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0010	834	1	0	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0011	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0012	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0013	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0014	834	1	0	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0015	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0016	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0017	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0018	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0019	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0020	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0021	834	1	0	1	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0022	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0023	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0024	834	1	0	0	1	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS2_chr14_23631364_23650639	0/0	t0025	834	1	1	0	0	0	0	copy fasta	DHRS2	chr14	23631364	23650639
DHRS3_chr1_12562910_12623210	0/1	t0001	1292	50	8	13	16	1	11	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0002	1292	32	7	2	18	1	4	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0003	1299	24	0	2	17	1	4	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0004	1299	23	5	5	10	3	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0005	1294	19	8	4	3	2	2	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0006	1299	15	1	1	11	0	2	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0007	1295	14	2	0	10	0	2	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0008	1298	9	0	0	8	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0009	1291	9	1	2	5	1	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	1/0	t0010	1293	8	1	2	1	0	3	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0011	1300	8	4	1	2	1	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0012	1295	7	6	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0013	1295	7	1	1	0	1	4	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0014	1295	6	0	0	6	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0015	1300	5	1	2	1	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0016	1294	5	3	0	2	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0017	1299	5	1	1	2	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0018	1291	4	0	3	0	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0019	1291	4	2	0	1	1	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0020	1295	4	4	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0021	1294	4	3	1	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0022	1300	4	0	0	4	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0023	1296	4	0	0	4	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0024	1297	3	3	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0025	1292	3	0	0	2	0	1	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0026	1293	3	3	0	0	0	0	copy fasta	DHRS3	chr1	12562910	12623210
DHRS3_chr1_12562910_12623210	0/0	t0027	1293	3	2	0	0	1	0	copy fasta	DHRS3	chr1	12562910	12623210